Non-Coding RNA Search

Ss1.1-Pig4-TMW8035J20.5

Sequence:


               
               GCGGCTCGAGTCTGGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAATATCATCAAACTG
AAGCGTGAGGAGGAGACATTGGACACCATCAAGCAGTATTATGTCCTGTGCAATAACAGA
GACGAGAAGTTCCAGGCCTTGTGTAACCTGTACGGAGCCATCACCATTGCTCAAGCCATG
CGCTTCCGAGAGGGCAAAGAGAAGGTTCTGGTCACCACCAACGTGTGTGCCCGCGGAATC
GATGTCGAACAGGTGTCCGTCGTCATCAACTTTGACCTGCCCGTGGACAAGGACGGGAAC
CCGGACAACGAGACCTACCTGCACCGGATCGGGCGCACCGGCCGCTTTGGCAAGAGGGGC
CTGGCGGTGAACATGGTGGACAGCAAGCACAGCATGAACATCCTCAACAGGATCCAGGAG
CATTTCAACAAGAAAATAGAAAGATTGGACACGGATGATTTGGACGAGATTGAGAAAATA
GCCAACTGAGAAGCTCCAGCCGTCGCTGGTGCCCGCCCTTGGCGCTCCCCCTGCACGGGA
CACTAGTGCTCATGGCCGAGCCTGGGCAGTCACCACAGAGACGAAGGAGGCACGGATAGC
GAGAAACTACCTACCTCATTTAAATTACGTTTGGACTTGGCAAAAATTGTGCAAATCATG
GGGGAAGGTAGACAAAATTGTTTACACAACTTGTGAAGATTAGGCGTGAATACACAGAAA
TTTACCTTTTGGAAATTCCATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGTCTGGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAATATCATCAAACTG
AAGCGTGAGGAGGAGACATTGGACACCATCAAGCAGTATTATGTCCTGTGCAATAACAGA
GACGAGAAGTTCCAGGCCTTGTGTAACCTGTACGGAGCCATCACCATTGCTCAAGCCATG
CGCTTCCGAGAGGGCAAAGAGAAGGTTCTGGTCACCACCAACGTGTGTGCCCGCGGAATC
GATGTCGAACAGGTGTCCGTCGTCATCAACTTTGACCTGCCCGTGGACAAGGACGGGAAC
CCGGACAACGAGACCTACCTGCACCGGATCGGGCGCACCGGCCGCTTTGGCAAGAGGGGC
CTGGCGGTGAACATGGTGGACAGCAAGCACAGCATGAACATCCTCAACAGGATCCAGGAG
CATTTCAACAAGAAAATAGAAAGATTGGACACGGATGATTTGGACGAGATTGAGAAAATA
GCCAACTGAGAAGCTCCAGCCGTCGCTGGTGCCCGCCCTTGGCGCTCCCCCTGCACGGGA
CACTAGTGCTCATGGCCGAGCCTGGGCAGTCACCACAGAGACGAAGGAGGCACGGATAGC
GAGAAACTACCTACCTCATTTAAATTACGTTTGGACTTGGCAAAAATTGTGCAAATCATG
GGGGAAGGTAGACAAAATTGTTTACACAACTTGTGAAGATTAGGCGTGAATACACAGAAA
TTTACCTTTTGGAAATTCCATCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31417274|gb|AAH10008.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31417274|gb|AAH10008.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               10-186, gnl|bosTau2|chr18 (444742-444566)
               

               
               10-186, gnl|Hg17|chr16 (68921290-68921466)
               

               
               10-186, gnl|Mm7|chr8 (109611079-109610903)
               


               
               27-176, gnl|bosTau2|chr15 (701980-701836)
               

               
               27-176, gnl|Hg17|chr16 (68921307-68921456)
               

               
               27-176, gnl|Mm7|chr8 (109611074-109610913)
               


               
               241-498, gnl|bosTau2|chr15 (701639-701393)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-186, gnl|bosTau2|chr18 (444742-444566)
               

               
               10-186, gnl|Hg17|chr16 (68921290-68921466)
               

               
               10-186, gnl|Mm7|chr8 (109611079-109610903)
               


               
               27-176, gnl|bosTau2|chr15 (701980-701836)
               

               
               27-176, gnl|Hg17|chr16 (68921307-68921456)
               

               
               27-176, gnl|Mm7|chr8 (109611074-109610913)
               


               
               241-498, gnl|bosTau2|chr15 (701639-701393)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	10-186, gnl\|bosTau2\|chr18 (444742-444566)
	10-186, gnl\|Hg17\|chr16 (68921290-68921466)
	10-186, gnl\|Mm7\|chr8 (109611079-109610903)

	27-176, gnl\|bosTau2\|chr15 (701980-701836)
	27-176, gnl\|Hg17\|chr16 (68921307-68921456)
	27-176, gnl\|Mm7\|chr8 (109611074-109610913)

	241-498, gnl\|bosTau2\|chr15 (701639-701393)