Ss1.1-Pig4-TMW8035K02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGTGGGAAAGGAAAGGCTGTAATGGCGGCTGCTACTCTGGTCGAGAAGGTGCCGGGG AACGGCGCAGAAGAGCAGCAGCCCCCACTGGGGCCCGAGGAGCTAGCCGCCCAGAAGCGC GAACAGAGACTGCGCAAATTCCGGGAACTGCATCTGAAGCGGAATGAAGCTCGTAAATTA AATCACCAGGAAGTTGTTGAAGAAGATAAAAGACTTAAGTTACCTGCAAATTGGGAAGCC AAAAAAGCTCGTTTGGAGTGGGAACTACAAGAAGAAGAAAAGAAAAAGGAATGTGCAGCA AGAGGGGAAGACTATGAGAAAGTGAAATTGTTAGAGATCAGTGCAGAAGATGCAGAAAGA TGGGAGAGGAAGAAGAAGAGGAAAAACCCCGATCTGGGATTTTCAGATTATGCTGCTGCC CAGCTTCGTCAGTATCATCGGCTGACCAAACAGATCAAACCAGACATGGAAACGTATGAG AGACTGAGAGAAAAGCATGGAGAAGAGTTTTTTCCAACATCCAACAGTCTTCTTCATGGA ACACACGTGCCTTCCACAGAGGAAATTGATAGAATGGTGGTAGATCTGGAAAAACAAATT GAAAAACGAGACAAATATAGCCGGAGACGTCCCTATAATGATGATGCAGATATTGACTAC ATTAATGAAAGGAATGCCAAGTTCAACAAGAAGGCAGAAAGATTCTATGGGAAATATACA GCTGAAATTAAACAGAATTTGGAAAGAGGAACAGCTGTCTAATCCATTACTTCAGGAACT GTTTCGAGAAGCTTCAAAATGGAGGGGAAGTTTCTGTTAGCAAACTGATGTTGTCTTCAG TTATACCAGTGAGCCAGAGCTCCTTCTATGCTTTCCACTTAGCATTTAAAAATAAATGTT TTTTCTTAAACATACACTTCCACGTATGTTTTCCACAATTTTGTGCTTGGATATAAGATG TATTTCTTGTAGTGTACTTGTTTTGTAAAAATCTACTTTGTATAAATTCTAATTATATTA TTTTTCTATGTATTTTAAATGTGTATGTTGAATCTTTGAAGCATTTTGGGTTCAAGAATG CCGGCAGCATATGTAAATGCAGTCATTGTTAACTTTGAATGTTGTTACGAATTTGACAAA GATCTGGAACGGGACTCAGGAACCATTTGGGGTTGTAGACTCTGAAGCTAAGGATGGCGG TGAGGGAGGTGGCAGTGGCTCTTGGAGGGTGGGTGCAGGCTCTACCCCGGGCTGCTTAGG ACCAACTTGGAGAAGTAACAACTCTCCAGCCATGAATAGTGACCATGTACCGTCTCTCCT TCCCCACCCTTTTTTGGGGGTCATGCCTGAGGCACGCGTTAGTTCCTGGGCGAGGGATCC AACTCTTGTCGCAGTAGTAGCAATGGGTCCACCAGGGAACTCCCTGCAGTTCCCTTTTTA AAAAGTAAATACCTGTTGGAATAGAATACCCAGTAAATACTTTGTAAAACAAATATTTGT ATTTGCCCATTTATATATAGACAGATATACACATAACATGCTTCCATTCTACAAATATTT AACCATTTTCTATTACAGGAAATTCCAAACATATTCAAAAGAAGACAGTAAAGTAGTATG AGTCCCATATACCTAGTACTCATCTTCAGTAATTATCAACTTAGGCCAATCTTTGTTTCA TCTTTATTTCTATCTACTCTCTTAACTCTCATGTTACTTTGAAGGAAATAAATGTAAAAT TTCATTTATAAATATTTCAGTATGTATCTGAAAGATAAAAACTTAAAAAGACCACAATAC CATTATCACAATAGTTTTAATAAAAGTCAAGATATATAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGTGGGAAAGGAAAGGCTGTAATGGCGGCTGCTACTCTGGTCGAGAAGGTGCCGGGG AACGGCGCAGAAGAGCAGCAGCCCCCACTGGGGCCCGAGGAGCTAGCCGCCCAGAAGCGC GAACAGAGACTGCGCAAATTCCGGGAACTGCATCTGAAGCGGAATGAAGCTCGTAAATTA AATCACCAGGAAGTTGTTGAAGAAGATAAAAGACTTAAGTTACCTGCAAATTGGGAAGCC AAAAAAGCTCGTTTGGAGTGGGAACTACAAGAAGAAGAAAAGAAAAAGGAATGTGCAGCA AGAGGGGAAGACTATGAGAAAGTGAAATTGTTAGAGATCAGTGCAGAAGATGCAGAAAGA TGGGAGAGGAAGAAGAAGAGGAAAAACCCCGATCTGGGATTTTCAGATTATGCTGCTGCC CAGCTTCGTCAGTATCATCGGCTGACCAAACAGATCAAACCAGACATGGAAACGTATGAG AGACTGAGAGAAAAGCATGGAGAAGAGTTTTTTCCAACATCCAACAGTCTTCTTCATGGA ACACACGTGCCTTCCACAGAGGAAATTGATAGAATGGTGGTAGATCTGGAAAAACAAATT GAAAAACGAGACAAATATAGCCGGAGACGTCCCTATAATGATGATGCAGATATTGACTAC ATTAATGAAAGGAATGCCAAGTTCAACAAGAAGGCAGAAAGATTCTATGGGAAATATACA GCTGAAATTAAACAGAATTTGGAAAGAGGAACAGCTGTCTAATCCATTACTTCAGGAACT GTTTCGAGAAGCTTCAAAATGGAGGGGAAGTTTCTGTTAGCAAACTGATGTTGTCTTCAG TTATACCAGTGAGCCAGAGCTCCTTCTATGCTTTCCACTTAGCATTTAAAAATAAATGTT TTTTCTTAAACATACACTTCCACGTATGTTTTCCACAATTTTGTGCTTGGATATAAGATG TATTTCTTGTAGTGTACTTGTTTTGTAAAAATCTACTTTGTATAAATTCTAATTATATTA TTTTTCTATGTATTTTAAATGTGTATGTTGAATCTTTGAAGCATTTTGGGTTCAAGAATG CCGGCAGCATATGTAAATGCAGTCATTGTTAACTTTGAATGTTGTTACGAATTTGACAAA GATCTGGAACGGGACTCAGGAACCATTTGGGGTTGTAGACTCTGAAGCTAAGGATGGCGG TGAGGGAGGTGGCAGTGGCTCTTGGAGGGTGGGTGCAGGCTCTACCCCGGGCTGCTTAGG ACCAACTTGGAGAAGTAACAACTCTCCAGCCATGAATAGTGACCATGTACCGTCTCTCCT TCCCCACCCTTTTTTGGGGGTCATGCCTGAGGCACGCGTTAGTTCCTGGGCGAGGGATCC AACTCTTGTCGCAGTAGTAGCAATGGGTCCACCAGGGAACTCCCTGCAGTTCCCTTTTTA AAAAGTAAATACCTGTTGGAATAGAATACCCAGTAAATACTTTGTAAAACAAATATTTGT ATTTGCCCATTTATATATAGACAGATATACACATAACATGCTTCCATTCTACAAATATTT AACCATTTTCTATTACAGGAAATTCCAAACATATTCAAAAGAAGACAGTAAAGTAGTATG AGTCCCATATACCTAGTACTCATCTTCAGTAATTATCAACTTAGGCCAATCTTTGTTTCA TCTTTATTTCTATCTACTCTCTTAACTCTCATGTTACTTTGAAGGAAATAAATGTAAAAT TTCATTTATAAATATTTCAGTATGTATCTGAAAGATAAAAACTTAAAAAGACCACAATAC CATTATCACAATAGTTTTAATAAAAGTCAAGATATATAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 162-289, gnl|bosTau2|chr2 (80503064-80502937) | |
| 162-289, gnl|canFam2|chr2 (77466627-77466471) | |
| 162-289, gnl|canFam2|chr2 (77466493-77466619) | |
| 162-289, gnl|danRer3|chr13 (40804699-40804531) | |
| 162-289, gnl|dasNov1|scaffold_50596 (9004-9160) | |
| 162-289, gnl|dasNov1|scaffold_50596 (9138-9012) | |
| 162-289, gnl|echTel1|scaffold_309773 (5613-5461) | |
| 162-289, gnl|echTel1|scaffold_309773 (5485-5607) | |
| 162-289, gnl|fr1|chrUn (68398143-68398293) | |
| 162-289, gnl|galGal2|chr23 (2034207-2034353) | |
| 162-289, gnl|hg17|chr1 (25300789-25300945) | |
| 162-289, gnl|Hg17|chr1 (25300921-25300794) | |
| 162-289, gnl|hg17|chr9 (35000814-35000943) | |
| 162-289, gnl|loxAfr1|scaffold_115265 (338-182) | |
| 162-289, gnl|loxAfr1|scaffold_115265 (208-330) | |
| 162-289, gnl|mm7|chr4 (134313025-134312871) | |
| 162-289, gnl|mm7|chr4 (134312892-134313016) | |
| 162-289, gnl|Mm7|chr4 (134312892-134313019) | |
| 162-289, gnl|monDom2|scaffold_0 (120780726-120780849) | |
| 162-289, gnl|monDom2|scaffold_91 (2273492-2273339) | |
| 162-289, gnl|oryCun1|scaffold_146323 (11585-11738) | |
| 162-289, gnl|oryCun1|scaffold_196800 (6661-6534) | |
| 162-289, gnl|panTro1|chr1 (25702291-25702447) | |
| 162-289, gnl|panTro1|chr11 (35554778-35554907) | |
| 162-289, gnl|rheMac2|chr1 (27859764-27859920) | |
| 162-289, gnl|rheMac2|chr15 (42539132-42539006) | |
| 162-289, gnl|rn3|chr5 (153720830-153720675) | |
| 162-289, gnl|rn3|chr5 (153720696-153720820) | |
| 162-289, gnl|tetNig1|chr10 (3282690-3282525) | |
| 162-289, gnl|tetNig1|chr10 (3282551-3282679) | |
| 162-289, gnl|xenTro1|scaffold_23 (2548159-2547998) | |
| 597-1305, gnl|bosTau2|chr2 (80499991-80499294) | |
| 597-1305, gnl|Hg17|chr1 (25295228-25294528) | |
| 597-1305, gnl|Mm7|chr4 (134315277-134315885) | |
| 769-911, gnl|bosTau2|chr10 (34876828-34876685) | |
| 769-911, gnl|Hg17|chr1 (25295059-25294910) | |
| 1547-1835, gnl|bosTau2|chr16 (3115357-3115639) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-289, gnl|bosTau2|chr2 (80503064-80502937) | |
| 162-289, gnl|canFam2|chr2 (77466627-77466471) | |
| 162-289, gnl|canFam2|chr2 (77466493-77466619) | |
| 162-289, gnl|danRer3|chr13 (40804699-40804531) | |
| 162-289, gnl|dasNov1|scaffold_50596 (9004-9160) | |
| 162-289, gnl|dasNov1|scaffold_50596 (9138-9012) | |
| 162-289, gnl|echTel1|scaffold_309773 (5613-5461) | |
| 162-289, gnl|echTel1|scaffold_309773 (5485-5607) | |
| 162-289, gnl|fr1|chrUn (68398143-68398293) | |
| 162-289, gnl|galGal2|chr23 (2034207-2034353) | |
| 162-289, gnl|hg17|chr1 (25300789-25300945) | |
| 162-289, gnl|Hg17|chr1 (25300921-25300794) | |
| 162-289, gnl|hg17|chr9 (35000814-35000943) | |
| 162-289, gnl|loxAfr1|scaffold_115265 (338-182) | |
| 162-289, gnl|loxAfr1|scaffold_115265 (208-330) | |
| 162-289, gnl|mm7|chr4 (134313025-134312871) | |
| 162-289, gnl|mm7|chr4 (134312892-134313016) | |
| 162-289, gnl|Mm7|chr4 (134312892-134313019) | |
| 162-289, gnl|monDom2|scaffold_0 (120780726-120780849) | |
| 162-289, gnl|monDom2|scaffold_91 (2273492-2273339) | |
| 162-289, gnl|oryCun1|scaffold_146323 (11585-11738) | |
| 162-289, gnl|oryCun1|scaffold_196800 (6661-6534) | |
| 162-289, gnl|panTro1|chr1 (25702291-25702447) | |
| 162-289, gnl|panTro1|chr11 (35554778-35554907) | |
| 162-289, gnl|rheMac2|chr1 (27859764-27859920) | |
| 162-289, gnl|rheMac2|chr15 (42539132-42539006) | |
| 162-289, gnl|rn3|chr5 (153720830-153720675) | |
| 162-289, gnl|rn3|chr5 (153720696-153720820) | |
| 162-289, gnl|tetNig1|chr10 (3282690-3282525) | |
| 162-289, gnl|tetNig1|chr10 (3282551-3282679) | |
| 162-289, gnl|xenTro1|scaffold_23 (2548159-2547998) | |
| 597-1305, gnl|bosTau2|chr2 (80499991-80499294) | |
| 597-1305, gnl|Hg17|chr1 (25295228-25294528) | |
| 597-1305, gnl|Mm7|chr4 (134315277-134315885) | |
| 769-911, gnl|bosTau2|chr10 (34876828-34876685) | |
| 769-911, gnl|Hg17|chr1 (25295059-25294910) | |
| 1547-1835, gnl|bosTau2|chr16 (3115357-3115639) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| vin (0.665115) | |
| cty (0.62448) | |
| sin (0.524843) | |
| tbr (0.462535) | |
| lin (0.436808) | |
| ste (0.405625) | |
| bla (0.373042) | |
| cut (0.339847) | |
| isp (0.300752) | |
| fat (0.294855) | |
| cte (0.29274) | |
| csk (0.281492) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| mga (0.160205) | |
| liv (0.146284) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| cty (0.62448) | |
| sin (0.524843) | |
| tbr (0.462535) | |
| lin (0.436808) | |
| ste (0.405625) | |
| bla (0.373042) | |
| cut (0.339847) | |
| isp (0.300752) | |
| fat (0.294855) | |
| cte (0.29274) | |
| csk (0.281492) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| mga (0.160205) | |
| liv (0.146284) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |