Ss1.1-Pig4-TMW8035K12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATCTGCCCAATGGTCATGGCTTTGAGTGCTGCGTCTCCTTTTTACCGAGGCTATGTGTC AGACATTGATGGTCGCTGGGGCGTGATTTCTGCATCTGTAGATGATAGAACTCGGGAGGA GAGAGGCCTGGAGCCATTGAAGAACAATAGGTATAGGATCAGTAAGTCCCGATACGATTC AATAGACAGTTACTTATCTGAGTGCGGTGAGAAATACAATGACATCGACCTGACGAAAGA CGAAGAAATCTACGAACAGCTGTTGCAGGAAGGCATCGATCATCTCCTGGCCCAGCATGT GGCTCACCTCTTCATCAGAGACCCGCTAACTCTGTTTGAAGAGAAAATCCACCTGGACGA CGCCAATGAGTCTGACCATTTCGAGAATATTCAGTCCACAAATTGGCAGACGATGAGATT CAAGCCTCCTCCTCCAAACTCCGACATTGGGTGGAGAGTAGAATTCCGGCCCATGGAGGT GCAGTTGACAGACTTCGAGAACTCTGCGTACGTGGTGTTTGTGGTGCTGCTCACCAGGGT GATCCTCTCCTACAAACTGGACTTTCTCATCCCTCTGTCGAAGGTTGATGAGAACATGAT AGCAGCACAGAAGCGCGATGCTGTCCTGCAGGGAATGTTTTATTTCAGAAAAGATATTTG CAAAGGTGGCAATGCGGTGGTGGATGGCTGCGGCAAGGCCACAGGCAGCGCGGAGCAGGC GGCGGTGGCGGCAGCGGCAGAGTACACACTTATGAGCATTGACACCATCATCAATGGCAA GGAAGGGGTATTCCCGGGGCTGATCCCCATCCTGAACTCTTACCTGGAAAACATGGAGGT GGATGTAGACACCAGATGCAGTATCCTGAACTACCTAAAGCTGATTAAGAAGAGGGCGTC AGGGGAATTGATGACAGTTGCCAGATGGATGAGGGAGTTTATCGCAAACCATCCGGACTA CAAGCAAGACAGTGTGATAACTGATGAAATGAACTATAGCCTCCTTTTAAAGTGTAACCA GATTGCAAACGAATTATGTGAATGTCCAGAGTTACTTGGACCAGCATTTAGGAAAGTAAA ATACAGCGGAAGTAAAATCGACGCTTCTAGCTAGATATCCTGCAGAAAGAGAGACGTGTT ACTGTGTTACCAAAGGATTGACCCAGGACTCACAGCCTGCACACACGTAGTGTGAGGGTC AGATGATAGCACTGCACTGTTTCCTGGGCCGCTCGGTAGGAGTGGGTTTAGAGGCTTCCT CCAGTTAGGTAGATCTAGAGTTTATACAGTGTATATGTACATAGTAAAGTATTTTTATGA TTAACAGTGTATTTTAATAACATTGTATGGAAAGTCATTGTGAACTGGCTTGTACATTTT TTCAGTTCTTGCTCTGGAACAGCTACTGTCAAAGCAGTTTTGTAAATGTAATGTACTGGT AATTGTACTATATCTGCATTCCAGAGTTTAAAATGATTACTGTAAATTTTTGTTTTTTTA AAGACTTTACCCCGGGACCTGATTCACTGCAGCCTGTTGCTTCGCCTTACAGTTTGTTCT GCTAATTTTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATCTGCCCAATGGTCATGGCTTTGAGTGCTGCGTCTCCTTTTTACCGAGGCTATGTGTC AGACATTGATGGTCGCTGGGGCGTGATTTCTGCATCTGTAGATGATAGAACTCGGGAGGA GAGAGGCCTGGAGCCATTGAAGAACAATAGGTATAGGATCAGTAAGTCCCGATACGATTC AATAGACAGTTACTTATCTGAGTGCGGTGAGAAATACAATGACATCGACCTGACGAAAGA CGAAGAAATCTACGAACAGCTGTTGCAGGAAGGCATCGATCATCTCCTGGCCCAGCATGT GGCTCACCTCTTCATCAGAGACCCGCTAACTCTGTTTGAAGAGAAAATCCACCTGGACGA CGCCAATGAGTCTGACCATTTCGAGAATATTCAGTCCACAAATTGGCAGACGATGAGATT CAAGCCTCCTCCTCCAAACTCCGACATTGGGTGGAGAGTAGAATTCCGGCCCATGGAGGT GCAGTTGACAGACTTCGAGAACTCTGCGTACGTGGTGTTTGTGGTGCTGCTCACCAGGGT GATCCTCTCCTACAAACTGGACTTTCTCATCCCTCTGTCGAAGGTTGATGAGAACATGAT AGCAGCACAGAAGCGCGATGCTGTCCTGCAGGGAATGTTTTATTTCAGAAAAGATATTTG CAAAGGTGGCAATGCGGTGGTGGATGGCTGCGGCAAGGCCACAGGCAGCGCGGAGCAGGC GGCGGTGGCGGCAGCGGCAGAGTACACACTTATGAGCATTGACACCATCATCAATGGCAA GGAAGGGGTATTCCCGGGGCTGATCCCCATCCTGAACTCTTACCTGGAAAACATGGAGGT GGATGTAGACACCAGATGCAGTATCCTGAACTACCTAAAGCTGATTAAGAAGAGGGCGTC AGGGGAATTGATGACAGTTGCCAGATGGATGAGGGAGTTTATCGCAAACCATCCGGACTA CAAGCAAGACAGTGTGATAACTGATGAAATGAACTATAGCCTCCTTTTAAAGTGTAACCA GATTGCAAACGAATTATGTGAATGTCCAGAGTTACTTGGACCAGCATTTAGGAAAGTAAA ATACAGCGGAAGTAAAATCGACGCTTCTAGCTAGATATCCTGCAGAAAGAGAGACGTGTT ACTGTGTTACCAAAGGATTGACCCAGGACTCACAGCCTGCACACACGTAGTGTGAGGGTC AGATGATAGCACTGCACTGTTTCCTGGGCCGCTCGGTAGGAGTGGGTTTAGAGGCTTCCT CCAGTTAGGTAGATCTAGAGTTTATACAGTGTATATGTACATAGTAAAGTATTTTTATGA TTAACAGTGTATTTTAATAACATTGTATGGAAAGTCATTGTGAACTGGCTTGTACATTTT TTCAGTTCTTGCTCTGGAACAGCTACTGTCAAAGCAGTTTTGTAAATGTAATGTACTGGT AATTGTACTATATCTGCATTCCAGAGTTTAAAATGATTACTGTAAATTTTTGTTTTTTTA AAGACTTTACCCCGGGACCTGATTCACTGCAGCCTGTTGCTTCGCCTTACAGTTTGTTCT GCTAATTTTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1380-1492, + strand, RNAz p=0.998373 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1380-1492, + strand, RNAz p=0.998373 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001498, + |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 132-273, gnl|bosTau2|chr23 (5367546-5367687) | |
| 132-273, gnl|canFam2|chr12 (24015657-24015815) | |
| 132-273, gnl|dasNov1|scaffold_4147 (4375-4505) | |
| 132-273, gnl|echTel1|scaffold_324890 (5957-6107) | |
| 132-273, gnl|fr1|chrUn (145734960-145735107) | |
| 132-273, gnl|galGal2|chr3 (86509496-86509346) | |
| 132-273, gnl|hg17|chr6 (53480236-53480396) | |
| 132-273, gnl|Hg17|chr6 (53480377-53480236) | |
| 132-273, gnl|loxAfr1|scaffold_49225 (11295-11430) | |
| 132-273, gnl|mm7|chr9 (77828416-77828271) | |
| 132-273, gnl|Mm7|chr9 (77828273-77828414) | |
| 132-273, gnl|monDom2|scaffold_0 (183549089-183548926) | |
| 132-273, gnl|oryCun1|scaffold_194140 (85332-85174) | |
| 132-273, gnl|panTro1|chr5 (54509897-54510057) | |
| 132-273, gnl|rheMac2|chr4 (53126518-53126678) | |
| 132-273, gnl|rn3|chr8 (82774085-82773939) | |
| 132-273, gnl|tetNig1|chr17 (4482851-4482699) | |
| 132-273, gnl|xenTro1|scaffold_354 (634080-634240) | |
| 477-585, gnl|bosTau2|chr23 (5368863-5368971) | |
| 477-585, gnl|canFam2|chr12 (24014118-24014267) | |
| 477-585, gnl|danRer3|chr2 (11736963-11736813) | |
| 477-585, gnl|dasNov1|scaffold_4147 (2825-2976) | |
| 477-585, gnl|echTel1|scaffold_324890 (4481-4621) | |
| 477-585, gnl|fr1|chrUn (145734402-145734522) | |
| 477-585, gnl|galGal2|chr3 (86511745-86511599) | |
| 477-585, gnl|hg17|chr6 (53478130-53478279) | |
| 477-585, gnl|Hg17|chr6 (53478255-53478147) | |
| 477-585, gnl|loxAfr1|scaffold_56799 (7882-8031) | |
| 477-585, gnl|mm7|chr9 (77829877-77829731) | |
| 477-585, gnl|Mm7|chr9 (77829750-77829858) | |
| 477-585, gnl|monDom2|scaffold_0 (183554731-183554586) | |
| 477-585, gnl|oryCun1|scaffold_194140 (86740-86594) | |
| 477-585, gnl|panTro1|chr5 (54507792-54507941) | |
| 477-585, gnl|rheMac2|chr4 (53124411-53124560) | |
| 477-585, gnl|rn3|chr8 (82775570-82775424) | |
| 477-585, gnl|tetNig1|chr17 (4483393-4483273) | |
| 477-585, gnl|xenTro1|scaffold_354 (629359-629498) | |
| 900-1162, gnl|bosTau2|chr23 (5374965-5375227) | |
| 900-1162, gnl|Hg17|chr6 (53471727-53471473) | |
| 900-1162, gnl|Mm7|chr9 (77834601-77834876) | |
| 1265-1572, gnl|bosTau2|chr23 (5375298-5375620) | |
| 1265-1572, gnl|Hg17|chr6 (53471367-53471071) | |
| 1265-1572, gnl|Mm7|chr9 (77834963-77835250) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-273, gnl|bosTau2|chr23 (5367546-5367687) | |
| 132-273, gnl|canFam2|chr12 (24015657-24015815) | |
| 132-273, gnl|dasNov1|scaffold_4147 (4375-4505) | |
| 132-273, gnl|echTel1|scaffold_324890 (5957-6107) | |
| 132-273, gnl|fr1|chrUn (145734960-145735107) | |
| 132-273, gnl|galGal2|chr3 (86509496-86509346) | |
| 132-273, gnl|hg17|chr6 (53480236-53480396) | |
| 132-273, gnl|Hg17|chr6 (53480377-53480236) | |
| 132-273, gnl|loxAfr1|scaffold_49225 (11295-11430) | |
| 132-273, gnl|mm7|chr9 (77828416-77828271) | |
| 132-273, gnl|Mm7|chr9 (77828273-77828414) | |
| 132-273, gnl|monDom2|scaffold_0 (183549089-183548926) | |
| 132-273, gnl|oryCun1|scaffold_194140 (85332-85174) | |
| 132-273, gnl|panTro1|chr5 (54509897-54510057) | |
| 132-273, gnl|rheMac2|chr4 (53126518-53126678) | |
| 132-273, gnl|rn3|chr8 (82774085-82773939) | |
| 132-273, gnl|tetNig1|chr17 (4482851-4482699) | |
| 132-273, gnl|xenTro1|scaffold_354 (634080-634240) | |
| 477-585, gnl|bosTau2|chr23 (5368863-5368971) | |
| 477-585, gnl|canFam2|chr12 (24014118-24014267) | |
| 477-585, gnl|danRer3|chr2 (11736963-11736813) | |
| 477-585, gnl|dasNov1|scaffold_4147 (2825-2976) | |
| 477-585, gnl|echTel1|scaffold_324890 (4481-4621) | |
| 477-585, gnl|fr1|chrUn (145734402-145734522) | |
| 477-585, gnl|galGal2|chr3 (86511745-86511599) | |
| 477-585, gnl|hg17|chr6 (53478130-53478279) | |
| 477-585, gnl|Hg17|chr6 (53478255-53478147) | |
| 477-585, gnl|loxAfr1|scaffold_56799 (7882-8031) | |
| 477-585, gnl|mm7|chr9 (77829877-77829731) | |
| 477-585, gnl|Mm7|chr9 (77829750-77829858) | |
| 477-585, gnl|monDom2|scaffold_0 (183554731-183554586) | |
| 477-585, gnl|oryCun1|scaffold_194140 (86740-86594) | |
| 477-585, gnl|panTro1|chr5 (54507792-54507941) | |
| 477-585, gnl|rheMac2|chr4 (53124411-53124560) | |
| 477-585, gnl|rn3|chr8 (82775570-82775424) | |
| 477-585, gnl|tetNig1|chr17 (4483393-4483273) | |
| 477-585, gnl|xenTro1|scaffold_354 (629359-629498) | |
| 900-1162, gnl|bosTau2|chr23 (5374965-5375227) | |
| 900-1162, gnl|Hg17|chr6 (53471727-53471473) | |
| 900-1162, gnl|Mm7|chr9 (77834601-77834876) | |
| 1265-1572, gnl|bosTau2|chr23 (5375298-5375620) | |
| 1265-1572, gnl|Hg17|chr6 (53471367-53471071) | |
| 1265-1572, gnl|Mm7|chr9 (77834963-77835250) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| mas (0.210305) | |
| cli (0.152812) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| cov (0.132153) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| cli (0.152812) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| cov (0.132153) |