Non-Coding RNA Search

Ss1.1-Pig4-TMW8035L03.3

Sequence:


               
               GGGGATAGGTCCCACAGAACCCAGCTTTGCCTTTGCTGGGCAGATCATAAGCTGTCCCAA
ACTGGCCATAATATGTTACCCCTCCTGACTCTTGCTTCCCTTGGGATTGGCACCAGCTCC
CTGTGGGTGCCTCTCCTCTGACTTCAGTGGGACTGGCTAAGGAAGGCGATTATATGGCTG
GAGGCATTCTAACATCTCTTCTCTAGAGTGATCAGGAGAGATGTCTTTGCATCTCATGAA
ATGATTGGGCTGTCCTTCTAGATCCCCCTCAGATGTCTCATTTTGGTAGGGCCCATGAAG
GTGGCTCTTAAATCCCTTCTTCCCTTCAGCCTCCTTGTCTGGAGACAGTGTGGACTTTCC
CTTAGCCCAGGGTGTCAGCAGACTGGGAGCAGCCCTTCTTGGTACTGTGCTCTCAGCAGC
TGGCATGGGCCCCCAATTGTTCTTCTGTGAACAATGGACACTCTTTTTGGCCAGGAAGGG
AAACTCATGAAAGGAACATTTCTTTGGATGCTTGAGAGCTTTGTGGCAACCCTGCCTGTG
TGAGATGAACTGCAGTTTCTTCCTGCCTCAAGTGGGTGTTCCCTGGCTCTGAATGGACCC
CTTGTGAACGGAGCACACCGGGAAATTTGAGTTGGCGAAAGAAAGCATCCTTGGGGGTGG
GTTGTCAGAATGGCATTTGCCCAGGCACATCAACTCAAATACTCATTGAATATATAGGCT
TTTATATTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGATAGGTCCCACAGAACCCAGCTTTGCCTTTGCTGGGCAGATCATAAGCTGTCCCAA
ACTGGCCATAATATGTTACCCCTCCTGACTCTTGCTTCCCTTGGGATTGGCACCAGCTCC
CTGTGGGTGCCTCTCCTCTGACTTCAGTGGGACTGGCTAAGGAAGGCGATTATATGGCTG
GAGGCATTCTAACATCTCTTCTCTAGAGTGATCAGGAGAGATGTCTTTGCATCTCATGAA
ATGATTGGGCTGTCCTTCTAGATCCCCCTCAGATGTCTCATTTTGGTAGGGCCCATGAAG
GTGGCTCTTAAATCCCTTCTTCCCTTCAGCCTCCTTGTCTGGAGACAGTGTGGACTTTCC
CTTAGCCCAGGGTGTCAGCAGACTGGGAGCAGCCCTTCTTGGTACTGTGCTCTCAGCAGC
TGGCATGGGCCCCCAATTGTTCTTCTGTGAACAATGGACACTCTTTTTGGCCAGGAAGGG
AAACTCATGAAAGGAACATTTCTTTGGATGCTTGAGAGCTTTGTGGCAACCCTGCCTGTG
TGAGATGAACTGCAGTTTCTTCCTGCCTCAAGTGGGTGTTCCCTGGCTCTGAATGGACCC
CTTGTGAACGGAGCACACCGGGAAATTTGAGTTGGCGAAAGAAAGCATCCTTGGGGGTGG
GTTGTCAGAATGGCATTTGCCCAGGCACATCAACTCAAATACTCATTGAATATATAGGCT
TTTATATTTTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-507, + strand, RNAz p=0.99618

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-507, + strand, RNAz p=0.99618

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               356-447, + strand, RNAmicro p=0.994702

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               356-447, + strand, RNAmicro p=0.994702

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-149, gnl|bosTau2|chr22 (37952433-37952576)
               

               
               1-149, gnl|canFam2|chr20 (42723222-42723049)
               

               
               1-149, gnl|echTel1|scaffold_308615 (15265-15159)
               

               
               1-149, gnl|hg17|chr3 (49531455-49531614)
               

               
               1-149, gnl|Hg17|chr3 (49531465-49531601)
               

               
               1-149, gnl|loxAfr1|scaffold_133572 (1335-1197)
               

               
               1-149, gnl|oryCun1|scaffold_202632 (41734-41576)
               

               
               1-149, gnl|panTro1|chr2 (51059321-51059480)
               

               
               1-149, gnl|rheMac2|chr2 (86903979-86903820)
               


               
               156-732, gnl|bosTau2|chr22 (37952827-37953396)
               

               
               156-732, gnl|Hg17|chr3 (49531614-49532173)
               

               
               156-732, gnl|Mm7|chr9 (107943121-107942631)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-149, gnl|bosTau2|chr22 (37952433-37952576)
               

               
               1-149, gnl|canFam2|chr20 (42723222-42723049)
               

               
               1-149, gnl|echTel1|scaffold_308615 (15265-15159)
               

               
               1-149, gnl|hg17|chr3 (49531455-49531614)
               

               
               1-149, gnl|Hg17|chr3 (49531465-49531601)
               

               
               1-149, gnl|loxAfr1|scaffold_133572 (1335-1197)
               

               
               1-149, gnl|oryCun1|scaffold_202632 (41734-41576)
               

               
               1-149, gnl|panTro1|chr2 (51059321-51059480)
               

               
               1-149, gnl|rheMac2|chr2 (86903979-86903820)
               


               
               156-732, gnl|bosTau2|chr22 (37952827-37953396)
               

               
               156-732, gnl|Hg17|chr3 (49531614-49532173)
               

               
               156-732, gnl|Mm7|chr9 (107943121-107942631)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-149, gnl\|bosTau2\|chr22 (37952433-37952576)
	1-149, gnl\|canFam2\|chr20 (42723222-42723049)
	1-149, gnl\|echTel1\|scaffold_308615 (15265-15159)
	1-149, gnl\|hg17\|chr3 (49531455-49531614)
	1-149, gnl\|Hg17\|chr3 (49531465-49531601)
	1-149, gnl\|loxAfr1\|scaffold_133572 (1335-1197)
	1-149, gnl\|oryCun1\|scaffold_202632 (41734-41576)
	1-149, gnl\|panTro1\|chr2 (51059321-51059480)
	1-149, gnl\|rheMac2\|chr2 (86903979-86903820)

	156-732, gnl\|bosTau2\|chr22 (37952827-37953396)
	156-732, gnl\|Hg17\|chr3 (49531614-49532173)
	156-732, gnl\|Mm7\|chr9 (107943121-107942631)