Non-Coding RNA Search

Ss1.1-Pig4-TMW8035L05.3

Sequence:


               
               TGACAAGCCCCTACATTAACAAGGTTAAGCTCAACCCCTTTCCCCCCAGAACCTAGAATG
ATGCCCCCTCCCTCTCCCTCCTTTAACTCCCCCGCCCCAACATAAGGACAAGTCAATTTG
TCAGCTTCCTCTGGCTTGAAACGCCCTCCCCTCGATTTTATAGCCCACTTACCATGCATA
ACAGACAAGTCCCATATTTGTCAGTAGATGCCTTTTTTTTTTTTTCCCTCCCCGGCTTAA
GCCTTAAGTGCCAAATCACAAAAGAAAAAGCAGTAACAGTTTACAGAAGCAACTTAGTGC
CTTGTAATCTAACTTTGTCACTGTGACTACATTACCTCTTCAGCGCCAGAGGGCACCCGT
GAGCCTCCTGGAGCCTCTGCCCAGGGGGAGGGGGAGGTGGGGGAGGGGGGAGAAACCCAG
ACCCAGAACCAGCAGCTCCCTCCACTGGCAACAGGACGGCACCGGCACCTTCCCTGAGTT
CGGTCTCCTACACCCTTGCTCCTCCCCTCTCCCCAGTAACCCCCCCCATCCCCTTTGGGA
GAGGTGTCGCCAGACTTGGGTTTTTGGGGAAACCTATCTTGACATTCAAAACCTTTTTCT
TCCCGACCTGAACCTCTGTTGACTAATCTTGCCTGGGTTCGTGCAGGTCTGCAGGAAGGA
AGACTGCAAAAGCGGACGAAGATTGTGACATAAGTGGGACTTTGTGATTTAATTTTTTTC
TTTTCTTTTTTTTTCAAGTGGGGAGGAAGGGGAAGCTAGATGGACTATGAGAGACTTGAT
TTTGGTGCTAAAGTTCCCCAGTTCATATGTGACATCTGAAAAAAAAACAACAAAAAACGA
GAGAAAAGCTTAAAAAAAAACATGTAAGGGGTGAGCAGTTAATGGTATTCATTCCACATA
CAATATCTGTGTAAAACGATTTCCCGTAGAAGTAGCTTTAATGGTTTTTGCTCTAGAATA
CCGTAGGTCTATCCTTAGAGCACTCACGCCATGCTTTTTTCCCTGGGTTTTAAACTTCAT
ATAACTTTCAGAAATTGGAGAGCAAAAATTTTGCTTGTCACTGCACATCATTATAAAAAA
GCTTATTTAACTTATCAAAACGTATTTATTGCCAAACTATGCTTTTTTTGTTAATTTTGT
TCATATTTATCGGGATGACAAATCCATAGAATATATTCTTTTATGTTAAATTATGATCTT
CATATTAATCTTAAAATTTTGTGACGTGTCTTTTTCCTTTTTTTCCACAGTTTTAATATA
TTATTCTTCAACGACATTTTTTGTAACTTTACACTTTTTTTTGGTTATTTTATTTTAAAA
AAATGAAAAATTAATTTAAAAAAATGCAAAAAACTGTTGGATTATTTATTTTAGAAATTT
CCCCCCTTTGTGTTGGACTGCAAATTGAGTTTCTTTCTCTTTTGGCCTTTCACAACTAGG
ACTGAGAATGTATGTAAAAGTTCTGTGACAGTACAGAAGGAAAACAACTTTATGTATAGC
TTCTAAAAGGGAAAAAAAAAAAAAAAAGAAACCCTTTGACTTCCACGTGCCCATCTCAAG
ACATTCCGATTGCAGATTTGAGGTTCTGGATTCCAGGTTTTGGAGTTTTCCAATGTTAAT
GCAAACAGAACTGGCACACACACACATTAAGATGAATGTAATTATTATTCCTCTTGCTGG
TCACTACCGTCGCTTTCTATTTCTCTTTCTTTGTGTGAATTTATTTAAAAGAAAAAAAAA
CTTTTTGTAACGACTATTTGCAGTTTAAAAATCAATAAACCCTGTTTTTTTTCAAGAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACAAGCCCCTACATTAACAAGGTTAAGCTCAACCCCTTTCCCCCCAGAACCTAGAATG
ATGCCCCCTCCCTCTCCCTCCTTTAACTCCCCCGCCCCAACATAAGGACAAGTCAATTTG
TCAGCTTCCTCTGGCTTGAAACGCCCTCCCCTCGATTTTATAGCCCACTTACCATGCATA
ACAGACAAGTCCCATATTTGTCAGTAGATGCCTTTTTTTTTTTTTCCCTCCCCGGCTTAA
GCCTTAAGTGCCAAATCACAAAAGAAAAAGCAGTAACAGTTTACAGAAGCAACTTAGTGC
CTTGTAATCTAACTTTGTCACTGTGACTACATTACCTCTTCAGCGCCAGAGGGCACCCGT
GAGCCTCCTGGAGCCTCTGCCCAGGGGGAGGGGGAGGTGGGGGAGGGGGGAGAAACCCAG
ACCCAGAACCAGCAGCTCCCTCCACTGGCAACAGGACGGCACCGGCACCTTCCCTGAGTT
CGGTCTCCTACACCCTTGCTCCTCCCCTCTCCCCAGTAACCCCCCCCATCCCCTTTGGGA
GAGGTGTCGCCAGACTTGGGTTTTTGGGGAAACCTATCTTGACATTCAAAACCTTTTTCT
TCCCGACCTGAACCTCTGTTGACTAATCTTGCCTGGGTTCGTGCAGGTCTGCAGGAAGGA
AGACTGCAAAAGCGGACGAAGATTGTGACATAAGTGGGACTTTGTGATTTAATTTTTTTC
TTTTCTTTTTTTTTCAAGTGGGGAGGAAGGGGAAGCTAGATGGACTATGAGAGACTTGAT
TTTGGTGCTAAAGTTCCCCAGTTCATATGTGACATCTGAAAAAAAAACAACAAAAAACGA
GAGAAAAGCTTAAAAAAAAACATGTAAGGGGTGAGCAGTTAATGGTATTCATTCCACATA
CAATATCTGTGTAAAACGATTTCCCGTAGAAGTAGCTTTAATGGTTTTTGCTCTAGAATA
CCGTAGGTCTATCCTTAGAGCACTCACGCCATGCTTTTTTCCCTGGGTTTTAAACTTCAT
ATAACTTTCAGAAATTGGAGAGCAAAAATTTTGCTTGTCACTGCACATCATTATAAAAAA
GCTTATTTAACTTATCAAAACGTATTTATTGCCAAACTATGCTTTTTTTGTTAATTTTGT
TCATATTTATCGGGATGACAAATCCATAGAATATATTCTTTTATGTTAAATTATGATCTT
CATATTAATCTTAAAATTTTGTGACGTGTCTTTTTCCTTTTTTTCCACAGTTTTAATATA
TTATTCTTCAACGACATTTTTTGTAACTTTACACTTTTTTTTGGTTATTTTATTTTAAAA
AAATGAAAAATTAATTTAAAAAAATGCAAAAAACTGTTGGATTATTTATTTTAGAAATTT
CCCCCCTTTGTGTTGGACTGCAAATTGAGTTTCTTTCTCTTTTGGCCTTTCACAACTAGG
ACTGAGAATGTATGTAAAAGTTCTGTGACAGTACAGAAGGAAAACAACTTTATGTATAGC
TTCTAAAAGGGAAAAAAAAAAAAAAAAGAAACCCTTTGACTTCCACGTGCCCATCTCAAG
ACATTCCGATTGCAGATTTGAGGTTCTGGATTCCAGGTTTTGGAGTTTTCCAATGTTAAT
GCAAACAGAACTGGCACACACACACATTAAGATGAATGTAATTATTATTCCTCTTGCTGG
TCACTACCGTCGCTTTCTATTTCTCTTTCTTTGTGTGAATTTATTTAAAAGAAAAAAAAA
CTTTTTGTAACGACTATTTGCAGTTTAAAAATCAATAAACCCTGTTTTTTTTCAAGAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1799, gnl|bosTau2|chr10 (54880125-54878359)
               

               
               1-1799, gnl|Hg17|chr14 (68325915-68324132)
               

               
               1-1799, gnl|Mm7|chr12 (78072507-78070758)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1799, gnl|bosTau2|chr10 (54880125-54878359)
               

               
               1-1799, gnl|Hg17|chr14 (68325915-68324132)
               

               
               1-1799, gnl|Mm7|chr12 (78072507-78070758)

Expressed library(ies): 61 entry(ies)

More info

Expressed library(ies): 61 entry(ies)

Help | Less info


               
               liv (2.04798)
               

               
               cki (1.98282)
               

               
               rec (1.7307)
               

               
               gul (1.5983)
               

               
               aor (1.36692)
               

               
               spl (1.14548)
               

               
               sag (1.09629)
               

               
               fat (1.03199)
               

               
               cut (1.01954)
               

               
               tra (0.984737)
               

               
               kid (0.908147)
               

               
               ret (0.901133)
               

               
               amn (0.835422)
               

               
               ova (0.774793)
               

               
               elu (0.770713)
               

               
               sug (0.763747)
               

               
               jca (0.683761)
               

               
               tbr (0.616713)
               

               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               cbr (0.511902)
               

               
               nje (0.49776)
               

               
               jej (0.494609)
               

               
               mga (0.480615)
               

               
               eru (0.480192)
               

               
               spc (0.453463)
               

               
               lun (0.451467)
               

               
               ski (0.440205)
               

               
               cst (0.420109)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               ute (0.398353)
               

               
               eje (0.395335)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               isp (0.300752)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 61 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (2.04798)
               

               
               cki (1.98282)
               

               
               rec (1.7307)
               

               
               gul (1.5983)
               

               
               aor (1.36692)
               

               
               spl (1.14548)
               

               
               sag (1.09629)
               

               
               fat (1.03199)
               

               
               cut (1.01954)
               

               
               tra (0.984737)
               

               
               kid (0.908147)
               

               
               ret (0.901133)
               

               
               amn (0.835422)
               

               
               ova (0.774793)
               

               
               elu (0.770713)
               

               
               sug (0.763747)
               

               
               jca (0.683761)
               

               
               tbr (0.616713)
               

               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               cbr (0.511902)
               

               
               nje (0.49776)
               

               
               jej (0.494609)
               

               
               mga (0.480615)
               

               
               eru (0.480192)
               

               
               spc (0.453463)
               

               
               lun (0.451467)
               

               
               ski (0.440205)
               

               
               cst (0.420109)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               ute (0.398353)
               

               
               eje (0.395335)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               isp (0.300752)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	1-1799, gnl\|bosTau2\|chr10 (54880125-54878359)
	1-1799, gnl\|Hg17\|chr14 (68325915-68324132)
	1-1799, gnl\|Mm7\|chr12 (78072507-78070758)

	liv (2.04798)
	cki (1.98282)
	rec (1.7307)
	gul (1.5983)
	aor (1.36692)
	spl (1.14548)
	sag (1.09629)
	fat (1.03199)
	cut (1.01954)
	tra (0.984737)
	kid (0.908147)
	ret (0.901133)
	amn (0.835422)
	ova (0.774793)
	elu (0.770713)
	sug (0.763747)
	jca (0.683761)
	tbr (0.616713)
	lin (0.582411)
	pro (0.512033)
	cbr (0.511902)
	nje (0.49776)
	jej (0.494609)
	mga (0.480615)
	eru (0.480192)
	spc (0.453463)
	lun (0.451467)
	ski (0.440205)
	cst (0.420109)
	ste (0.405625)
	lyg (0.399308)
	ute (0.398353)
	eje (0.395335)
	thg (0.380373)
	mgm (0.360685)
	fty (0.351679)
	sme (0.305437)
	cag (0.302389)
	isp (0.300752)
	lnt (0.284616)
	pla (0.267344)
	nmm (0.265604)
	pgl (0.236967)
	mas (0.210305)
	cty (0.20816)
	tes (0.207814)
	fli (0.202881)
	fcc (0.197785)
	ldo (0.194005)
	ill (0.175593)
	ton (0.1755)
	sin (0.174948)
	fco (0.157208)
	eli (0.151814)
	csk (0.140746)
	hlv (0.139256)
	cov (0.132153)
	ese (0.126502)
	cly (0.120642)
	med (0.116252)
	cbl (0.114797)