Ss1.1-Pig4-TMW8035L06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGAGAGCAGAGCCTCAGACCTCACCAGGATCCATTTCCACACACTGGCCTACCACAT CCTGGCCACCGTGGACGGACACTGGGCCAACCAGCTGGCGGCCGTGGCTGCAGGAGCCCG CGTGGCGGGGACACAGGCCTGCGCGACAGCAACCATAGACACCCATCGAGTGTCTCTGAG GGCGCCCCTCGAGTTCGTGACCTCCCGTTCGGAGGCTGGCTCCAGGATCGTGTTAAACCC GAACGAGCCCGTGGTCGAGTGGCACAGGGAGGGGGTGTCCTTCCACTTCTCGCCAGTGCT GGTGTGTAAAGACCCCGTGCGAACCGTGGGCCTCGGGGACGCCATTTCAGCCGAAGGCCT CTTCTACTCAGAAGTGCACCCTCACCACTAGGAAGGTCGTCATGGGTCCTTTTTCTGCAG GAGAACTAGCCACCCAAGAACGACAGGAGTGAAGTGGTTTAGAAAATCAGAGGGGGTGTC AAAATGGTTTCTGGATCCACCTGAAAGACAGCCAAAGAAACAACAGCAGATTCAACTGTG CCAGATACATTCCAGCCTGCTGACGATTACACAAAAACGTTTCAGGTTTTTAATCAAAAT TTATCTACTAACAAGACTGGATTTTTGTTTTTGTTTTGTATGTTGTGCATACAGGGCTAA AAACTTGATTCCCAGATCCCCTCTTCAGGTATTTTCGGGCCTCCGTCTTTGTGCTCGCGA GCATGTCTGCTGGAGAAAGCTTTTCCCTTCCTCCCAACCCACCTGAGAGGCGCTCGCTCA CACACCGCTCCCCTGGAGGGGCTGGTAGAGCCCGGCGTGGGTTCTCTGTTCTCAGCTCCG CGCCCACGGCAGGATCACAATTCCCATTCAGTGTTATAATGGAAATATTTAACGAGCACA CCTTCTCAGTCTTCTGCTGTCAAACGTAGGACAGGACCTCAAGTGAGAACAAAACAGGTC TTCCTGTGCTTCAGCAATACGGCAGAGGCTGGAGCCAGTCACTGCAGTTTAGAGGCCTGG CGGCCTGCACCTTCCTGCCCTGGCTCCATAACTGTAGGCCGGCTGGTCAGAGCCACTGGC CCAACCTTGCTGCCCAGCTCTGGACATGCTCTCTGAAGTAGAAGACTGATCTGTGCTCAT TCTGACCCTTGAAGGAATTTACTTTTACAACTGGAATATGTCTCTGTGTGTGTAACAGAT CATGTATGTTTTAATTAACACATCGCATCCATTAAAGAGTTTGAGCTCATAAGAGCCCCA GGATCATGAATAAATGTGTCATGTTACGTATTTATTTTTTTTATAAATCAAGGAGACTTC AAGTGTGCTTTTAAATATATTAAAAATTTACATTTCAGGAGGACAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGAGAGCAGAGCCTCAGACCTCACCAGGATCCATTTCCACACACTGGCCTACCACAT CCTGGCCACCGTGGACGGACACTGGGCCAACCAGCTGGCGGCCGTGGCTGCAGGAGCCCG CGTGGCGGGGACACAGGCCTGCGCGACAGCAACCATAGACACCCATCGAGTGTCTCTGAG GGCGCCCCTCGAGTTCGTGACCTCCCGTTCGGAGGCTGGCTCCAGGATCGTGTTAAACCC GAACGAGCCCGTGGTCGAGTGGCACAGGGAGGGGGTGTCCTTCCACTTCTCGCCAGTGCT GGTGTGTAAAGACCCCGTGCGAACCGTGGGCCTCGGGGACGCCATTTCAGCCGAAGGCCT CTTCTACTCAGAAGTGCACCCTCACCACTAGGAAGGTCGTCATGGGTCCTTTTTCTGCAG GAGAACTAGCCACCCAAGAACGACAGGAGTGAAGTGGTTTAGAAAATCAGAGGGGGTGTC AAAATGGTTTCTGGATCCACCTGAAAGACAGCCAAAGAAACAACAGCAGATTCAACTGTG CCAGATACATTCCAGCCTGCTGACGATTACACAAAAACGTTTCAGGTTTTTAATCAAAAT TTATCTACTAACAAGACTGGATTTTTGTTTTTGTTTTGTATGTTGTGCATACAGGGCTAA AAACTTGATTCCCAGATCCCCTCTTCAGGTATTTTCGGGCCTCCGTCTTTGTGCTCGCGA GCATGTCTGCTGGAGAAAGCTTTTCCCTTCCTCCCAACCCACCTGAGAGGCGCTCGCTCA CACACCGCTCCCCTGGAGGGGCTGGTAGAGCCCGGCGTGGGTTCTCTGTTCTCAGCTCCG CGCCCACGGCAGGATCACAATTCCCATTCAGTGTTATAATGGAAATATTTAACGAGCACA CCTTCTCAGTCTTCTGCTGTCAAACGTAGGACAGGACCTCAAGTGAGAACAAAACAGGTC TTCCTGTGCTTCAGCAATACGGCAGAGGCTGGAGCCAGTCACTGCAGTTTAGAGGCCTGG CGGCCTGCACCTTCCTGCCCTGGCTCCATAACTGTAGGCCGGCTGGTCAGAGCCACTGGC CCAACCTTGCTGCCCAGCTCTGGACATGCTCTCTGAAGTAGAAGACTGATCTGTGCTCAT TCTGACCCTTGAAGGAATTTACTTTTACAACTGGAATATGTCTCTGTGTGTGTAACAGAT CATGTATGTTTTAATTAACACATCGCATCCATTAAAGAGTTTGAGCTCATAAGAGCCCCA GGATCATGAATAAATGTGTCATGTTACGTATTTATTTTTTTTATAAATCAAGGAGACTTC AAGTGTGCTTTTAAATATATTAAAAATTTACATTTCAGGAGGACAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2-120, + strand, RNAz p=0.572789 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-120, + strand, RNAz p=0.572789 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 2-351, gnl|bosTau2|chr10 (11013065-11012716) | |
| 2-351, gnl|canFam2|chr30 (39115148-39115716) | |
| 2-351, gnl|danRer3|chr25 (890040-889489) | |
| 2-351, gnl|dasNov1|scaffold_10596 (44100-43531) | |
| 2-351, gnl|echTel1|scaffold_218785 (8157-8726) | |
| 2-351, gnl|fr1|chrUn (237285850-237286413) | |
| 2-351, gnl|galGal2|chr10 (952901-952332) | |
| 2-351, gnl|hg17|chr15 (70831736-70832303) | |
| 2-351, gnl|Hg17|chr15 (70832124-70831775) | |
| 2-351, gnl|loxAfr1|scaffold_67 (267285-266719) | |
| 2-351, gnl|mm7|chr9 (59342210-59341646) | |
| 2-351, gnl|Mm7|chr9 (59341823-59342172) | |
| 2-351, gnl|monDom2|scaffold_41 (6514476-6513909) | |
| 2-351, gnl|oryCun1|scaffold_106424 (9134-9699) | |
| 2-351, gnl|panTro1|chr16_random (19941555-19942122) | |
| 2-351, gnl|rheMac2|chr7 (51434115-51434682) | |
| 2-351, gnl|rn3|chr8 (63166901-63166337) | |
| 2-351, gnl|tetNig1|chr13 (7977545-7978094) | |
| 2-351, gnl|xenTro1|scaffold_62 (459633-459079) | |
| 444-992, gnl|bosTau2|chr10 (11012654-11012100) | |
| 444-992, gnl|Hg17|chr15 (70831772-70831170) | |
| 444-992, gnl|Mm7|chr9 (59342263-59342735) | |
| 1022-1360, gnl|bosTau2|chr10 (11012017-11011673) | |
| 1022-1360, gnl|Hg17|chr15 (70831104-70830762) | |
| 1022-1360, gnl|Mm7|chr9 (59342787-59343126) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-351, gnl|bosTau2|chr10 (11013065-11012716) | |
| 2-351, gnl|canFam2|chr30 (39115148-39115716) | |
| 2-351, gnl|danRer3|chr25 (890040-889489) | |
| 2-351, gnl|dasNov1|scaffold_10596 (44100-43531) | |
| 2-351, gnl|echTel1|scaffold_218785 (8157-8726) | |
| 2-351, gnl|fr1|chrUn (237285850-237286413) | |
| 2-351, gnl|galGal2|chr10 (952901-952332) | |
| 2-351, gnl|hg17|chr15 (70831736-70832303) | |
| 2-351, gnl|Hg17|chr15 (70832124-70831775) | |
| 2-351, gnl|loxAfr1|scaffold_67 (267285-266719) | |
| 2-351, gnl|mm7|chr9 (59342210-59341646) | |
| 2-351, gnl|Mm7|chr9 (59341823-59342172) | |
| 2-351, gnl|monDom2|scaffold_41 (6514476-6513909) | |
| 2-351, gnl|oryCun1|scaffold_106424 (9134-9699) | |
| 2-351, gnl|panTro1|chr16_random (19941555-19942122) | |
| 2-351, gnl|rheMac2|chr7 (51434115-51434682) | |
| 2-351, gnl|rn3|chr8 (63166901-63166337) | |
| 2-351, gnl|tetNig1|chr13 (7977545-7978094) | |
| 2-351, gnl|xenTro1|scaffold_62 (459633-459079) | |
| 444-992, gnl|bosTau2|chr10 (11012654-11012100) | |
| 444-992, gnl|Hg17|chr15 (70831772-70831170) | |
| 444-992, gnl|Mm7|chr9 (59342263-59342735) | |
| 1022-1360, gnl|bosTau2|chr10 (11012017-11011673) | |
| 1022-1360, gnl|Hg17|chr15 (70831104-70830762) | |
| 1022-1360, gnl|Mm7|chr9 (59342787-59343126) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| csp (0.161186) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| ebs (0.118301) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| sin (0.174948) | |
| csp (0.161186) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| ebs (0.118301) |