Non-Coding RNA Search

Ss1.1-Pig4-TMW8035L11.5

Sequence:


               
               ACTGGGGAGGAGAGAGTATCAGAGTTTACAGCACCGCCATCATTCTCAGCGGTCTAAGTG
CCGTCCCCCCAAGGGCATGTATTTAACCCAGGAAGACGTGGTAGCTGTTTCCTGTAGTCC
CAGTGCGGCCAACACCATCCTGAGGCAACTGGACATGGAGTTGATCTCTTTAAAACGTCA
GGTTCAGAATGCTAAGCAAGTGAACAGTGCGCTTAAACAGAAAATGGAAGGTGGAATTGA
GGAGTTCAAACCTCCCGAGTCAAATCAGAAAATTAATGCCCGTTGGACCACAGAGGAGCA
GCTTCTAGCAGTGCAAGGTGTCCGCAAATATGGTAAAGATTTTCAAGCTATTGCAGATGT
AATTGGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTTTGTAAACTACAGGCGTCGGTT
TAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTCTAATGG
TGATGCTTCTACTTTAGGGGAGGAGACAAAAAGTGCTTCTAATGTGCCATCAGGGAAGAG
CACTGATGAAGAAGAGGAGGTGTGTTTGTGTATGGAATTTGAGCTAATATGAGTTGAGGA
ATCACCATTTTGTGTGTCCTGTAAGAATTTTTCAGAGGACTAGCTAAATGAGCATGAAAG
GTTGACAATACACTTACTCAGTGGTGCATCTCTCGTGACTCTTAAGTCATAATGACATGC
TAAGTTCTGATCCTAGAAGAATGGAGAGTGTATTGTTCTTTCATAGTCTTATTTTTATTT
CCAGTGTTAAGCTGTTTACTAATAAAGATGCCCGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGGGAGGAGAGAGTATCAGAGTTTACAGCACCGCCATCATTCTCAGCGGTCTAAGTG
CCGTCCCCCCAAGGGCATGTATTTAACCCAGGAAGACGTGGTAGCTGTTTCCTGTAGTCC
CAGTGCGGCCAACACCATCCTGAGGCAACTGGACATGGAGTTGATCTCTTTAAAACGTCA
GGTTCAGAATGCTAAGCAAGTGAACAGTGCGCTTAAACAGAAAATGGAAGGTGGAATTGA
GGAGTTCAAACCTCCCGAGTCAAATCAGAAAATTAATGCCCGTTGGACCACAGAGGAGCA
GCTTCTAGCAGTGCAAGGTGTCCGCAAATATGGTAAAGATTTTCAAGCTATTGCAGATGT
AATTGGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTTTGTAAACTACAGGCGTCGGTT
TAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTCTAATGG
TGATGCTTCTACTTTAGGGGAGGAGACAAAAAGTGCTTCTAATGTGCCATCAGGGAAGAG
CACTGATGAAGAAGAGGAGGTGTGTTTGTGTATGGAATTTGAGCTAATATGAGTTGAGGA
ATCACCATTTTGTGTGTCCTGTAAGAATTTTTCAGAGGACTAGCTAAATGAGCATGAAAG
GTTGACAATACACTTACTCAGTGGTGCATCTCTCGTGACTCTTAAGTCATAATGACATGC
TAAGTTCTGATCCTAGAAGAATGGAGAGTGTATTGTTCTTTCATAGTCTTATTTTTATTT
CCAGTGTTAAGCTGTTTACTAATAAAGATGCCCGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61813137|ref|XP_599687.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61813137|ref|XP_599687.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               663-782, + strand, RNAz p=0.998878

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               663-782, + strand, RNAz p=0.998878

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-183, gnl|bosTau2|chr16 (54951478-54951660)
               

               
               1-183, gnl|Hg17|chr1 (207850953-207851135)
               

               
               1-183, gnl|Mm7|chr1 (191673151-191672969)
               


               
               316-815, gnl|bosTau2|chr16 (54971432-54971937)
               

               
               316-815, gnl|Hg17|chr1 (207874455-207874962)
               

               
               316-815, gnl|Mm7|chr1 (191654714-191654239)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-183, gnl|bosTau2|chr16 (54951478-54951660)
               

               
               1-183, gnl|Hg17|chr1 (207850953-207851135)
               

               
               1-183, gnl|Mm7|chr1 (191673151-191672969)
               


               
               316-815, gnl|bosTau2|chr16 (54971432-54971937)
               

               
               316-815, gnl|Hg17|chr1 (207874455-207874962)
               

               
               316-815, gnl|Mm7|chr1 (191654714-191654239)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.272628)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               ste (0.135208)

	1-183, gnl\|bosTau2\|chr16 (54951478-54951660)
	1-183, gnl\|Hg17\|chr1 (207850953-207851135)
	1-183, gnl\|Mm7\|chr1 (191673151-191672969)

	316-815, gnl\|bosTau2\|chr16 (54971432-54971937)
	316-815, gnl\|Hg17\|chr1 (207874455-207874962)
	316-815, gnl\|Mm7\|chr1 (191654714-191654239)