Ss1.1-Pig4-TMW8035L12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTCTGCTGAGATGTTATCTTCAGAGCCAAAAGACAGCACCTCAGCTGAAGAAAGCAAT GGCACGCTGGAGGAAAAACAGCCTTCAGAACAAGATAATGAGGACAGCGTGGCGGAGACC CAAGAGAGCAGTCACCCAGAAGAACAAGAGACGATGGAAATGATCTCTCAAGACCCAGAA TATAAGGAGCCTAAAGAGAGAGGAAGCAAAAAGGATTATATTCAGGAAAAGCAGAGGAGA CAAGAAGAGCAGAAGAAAAGACATTTAGAAGCTGCTGCGCTGCTGAGTGAAAAAAACGCG GATGGTTTAATTGTAGCTAGTCGTTTCCATCCTACTCCACTGCTGCTGTCTTTGCTGGAC TTTGTGGCTCCTTCAAGGCCATTCGTGGTCTACTGTCAGTATAAAGAGCCTCTGTTGGAA TGCTACACAAAACTGCGGGAAAGAGGAGGGGTCATCAACCTCAGGCTGTCTGAAACCTGG CTTAGAAATTACCAGGTTTTGCCAGATCGAAGTCATCCCAAACTACTGATGAGCGGAGGT GGGGGGTACCTTCTCTCAGGCTTCACCGTGGCCATGGACAACCTTAAAGCAGACACTAGT CTCAAATCCAGCACCAGCACTTTAGAATCATACAAGACTGAAGAGCCAGCAGCTAAAAAA CGGAAATGCCCGGAGTCTGACGCTTAACCTTTCAAAGATTGCTTTGATTTTTGTTCTTAG GCATTTTATAGTTAGGATGTAAACTTTAAATGCCATTACTAATTGTTTTTTCATAGCCTA AGAATAAGAACATGTCTATATACCTGTTCCTAGGAAGGACAAGTAAGCCTTTTGTCCACC TCTGATGCAGATGGATTTGGTCTGTCAAAACCTGGAGCCAAATCCCCAAGCCTAGAATAA GCAGTGGACTAGTATATGGCCAGTTCTGTTTATTTCACAAAAATTCTCTAAGTACTTTTA GTACTCTGTGCAAATATCTTGAGAATTTAGGCATCTGAAAAATATATTTATACAACATGT TTGTTTTTATGTTAAGCTAAGTGGAATAACCTGCCATCAGTGAAACTTGGGTACTAAAAG GAAGGAATTTGTGGAAGAATTTCCTCTGTTTGATTACACTCTCTTCAACCTAAGCAATAT GAATGTGTGTGAGATTTACAGTACCAAAAATGTCCACCCTTTCTCCCCCAATGGAATAAA CTTTTTAAAAAATGTTATATTTTATTATTTTATAGTTGACGACCTAGGAAAGCTCTGAAT ATTTATTTTACTGTTGTTTTTGTCCATAGAAAGGTGTAGTAGGGTAGTTTTTTGCATTAA TATTCCAATTCCTCTCTTTGTTCCAAATAAAATTTTGTGTGCTATTCAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTCTGCTGAGATGTTATCTTCAGAGCCAAAAGACAGCACCTCAGCTGAAGAAAGCAAT GGCACGCTGGAGGAAAAACAGCCTTCAGAACAAGATAATGAGGACAGCGTGGCGGAGACC CAAGAGAGCAGTCACCCAGAAGAACAAGAGACGATGGAAATGATCTCTCAAGACCCAGAA TATAAGGAGCCTAAAGAGAGAGGAAGCAAAAAGGATTATATTCAGGAAAAGCAGAGGAGA CAAGAAGAGCAGAAGAAAAGACATTTAGAAGCTGCTGCGCTGCTGAGTGAAAAAAACGCG GATGGTTTAATTGTAGCTAGTCGTTTCCATCCTACTCCACTGCTGCTGTCTTTGCTGGAC TTTGTGGCTCCTTCAAGGCCATTCGTGGTCTACTGTCAGTATAAAGAGCCTCTGTTGGAA TGCTACACAAAACTGCGGGAAAGAGGAGGGGTCATCAACCTCAGGCTGTCTGAAACCTGG CTTAGAAATTACCAGGTTTTGCCAGATCGAAGTCATCCCAAACTACTGATGAGCGGAGGT GGGGGGTACCTTCTCTCAGGCTTCACCGTGGCCATGGACAACCTTAAAGCAGACACTAGT CTCAAATCCAGCACCAGCACTTTAGAATCATACAAGACTGAAGAGCCAGCAGCTAAAAAA CGGAAATGCCCGGAGTCTGACGCTTAACCTTTCAAAGATTGCTTTGATTTTTGTTCTTAG GCATTTTATAGTTAGGATGTAAACTTTAAATGCCATTACTAATTGTTTTTTCATAGCCTA AGAATAAGAACATGTCTATATACCTGTTCCTAGGAAGGACAAGTAAGCCTTTTGTCCACC TCTGATGCAGATGGATTTGGTCTGTCAAAACCTGGAGCCAAATCCCCAAGCCTAGAATAA GCAGTGGACTAGTATATGGCCAGTTCTGTTTATTTCACAAAAATTCTCTAAGTACTTTTA GTACTCTGTGCAAATATCTTGAGAATTTAGGCATCTGAAAAATATATTTATACAACATGT TTGTTTTTATGTTAAGCTAAGTGGAATAACCTGCCATCAGTGAAACTTGGGTACTAAAAG GAAGGAATTTGTGGAAGAATTTCCTCTGTTTGATTACACTCTCTTCAACCTAAGCAATAT GAATGTGTGTGAGATTTACAGTACCAAAAATGTCCACCCTTTCTCCCCCAATGGAATAAA CTTTTTAAAAAATGTTATATTTTATTATTTTATAGTTGACGACCTAGGAAAGCTCTGAAT ATTTATTTTACTGTTGTTTTTGTCCATAGAAAGGTGTAGTAGGGTAGTTTTTTGCATTAA TATTCCAATTCCTCTCTTTGTTCCAAATAAAATTTTGTGTGCTATTCAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.953875 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.953875 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-219, gnl|bosTau2|chr13 (32970593-32970811) | |
| 1-219, gnl|Hg17|chr20 (5871292-5871074) | |
| 1-219, gnl|Mm7|chr2 (132549729-132549514) | |
| 307-408, gnl|bosTau2|chr13 (32971914-32972015) | |
| 307-408, gnl|canFam2|chr24 (18900034-18899887) | |
| 307-408, gnl|danRer3|chrNA (172536252-172536375) | |
| 307-408, gnl|dasNov1|scaffold_43046 (10134-9996) | |
| 307-408, gnl|echTel1|scaffold_284768 (51481-51337) | |
| 307-408, gnl|fr1|chrUn (204210584-204210727) | |
| 307-408, gnl|galGal2|chr3 (13251321-13251464) | |
| 307-408, gnl|hg17|chr20 (5869857-5870004) | |
| 307-408, gnl|Hg17|chr20 (5869990-5869889) | |
| 307-408, gnl|mm7|chr2 (132547719-132547865) | |
| 307-408, gnl|Mm7|chr2 (132547851-132547750) | |
| 307-408, gnl|monDom2|scaffold_1 (36196549-36196703) | |
| 307-408, gnl|oryCun1|scaffold_176117 (46346-46493) | |
| 307-408, gnl|panTro1|chr21_random (17299626-17299479) | |
| 307-408, gnl|rheMac2|chr10 (39243400-39243547) | |
| 307-408, gnl|rn3|chr3 (120511047-120511193) | |
| 307-408, gnl|tetNig1|chr14 (7470699-7470553) | |
| 494-1351, gnl|bosTau2|chr13 (32973508-32974360) | |
| 494-1351, gnl|Hg17|chr20 (5867374-5866532) | |
| 494-1351, gnl|Mm7|chr2 (132546467-132545674) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-219, gnl|bosTau2|chr13 (32970593-32970811) | |
| 1-219, gnl|Hg17|chr20 (5871292-5871074) | |
| 1-219, gnl|Mm7|chr2 (132549729-132549514) | |
| 307-408, gnl|bosTau2|chr13 (32971914-32972015) | |
| 307-408, gnl|canFam2|chr24 (18900034-18899887) | |
| 307-408, gnl|danRer3|chrNA (172536252-172536375) | |
| 307-408, gnl|dasNov1|scaffold_43046 (10134-9996) | |
| 307-408, gnl|echTel1|scaffold_284768 (51481-51337) | |
| 307-408, gnl|fr1|chrUn (204210584-204210727) | |
| 307-408, gnl|galGal2|chr3 (13251321-13251464) | |
| 307-408, gnl|hg17|chr20 (5869857-5870004) | |
| 307-408, gnl|Hg17|chr20 (5869990-5869889) | |
| 307-408, gnl|mm7|chr2 (132547719-132547865) | |
| 307-408, gnl|Mm7|chr2 (132547851-132547750) | |
| 307-408, gnl|monDom2|scaffold_1 (36196549-36196703) | |
| 307-408, gnl|oryCun1|scaffold_176117 (46346-46493) | |
| 307-408, gnl|panTro1|chr21_random (17299626-17299479) | |
| 307-408, gnl|rheMac2|chr10 (39243400-39243547) | |
| 307-408, gnl|rn3|chr3 (120511047-120511193) | |
| 307-408, gnl|tetNig1|chr14 (7470699-7470553) | |
| 494-1351, gnl|bosTau2|chr13 (32973508-32974360) | |
| 494-1351, gnl|Hg17|chr20 (5867374-5866532) | |
| 494-1351, gnl|Mm7|chr2 (132546467-132545674) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| rec (0.519211) | |
| fco (0.314416) | |
| lin (0.291206) | |
| ste (0.270416) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cje (0.165235) | |
| mga (0.160205) | |
| fat (0.147427) | |
| csk (0.140746) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.519211) | |
| fco (0.314416) | |
| lin (0.291206) | |
| ste (0.270416) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cje (0.165235) | |
| mga (0.160205) | |
| fat (0.147427) | |
| csk (0.140746) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| ldo (0.0970026) |