Ss1.1-Pig4-TMW8035L17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGATAACCCAGCTGCTGTAAGCCCAACTCCTACAAGACAGCTAACTTTTAACTACCTC CTTCCTGTGAATGCTTGGCTTCTGTTAAATCCTTCAGAGCTCTGCTGTGATTGGACAATG GGAACAATACCACTTATAGAGTCATTTCTAGATGTTCGAAATCTTGCCACATTTATTTTT TTTTGCTTTTTGGGGGCTTTAGGAGTATTCAGTCTCAGATACTCTGGTGATTCCTCCAAG ACTGTTTTAATGGCACTTTGTTTAATGGCGTTACCATTTATTCCTGCATCAAACCTTTTT TTTCCCGTTGGATTTGTTGTTGCTGAGAGAGTTTTATATGTTCCTAGCATGGGGTTCTGT ATTTTGGTAGCCCATGGATGGCAGAAAATATCTAACAAAAGTATATTAAAAAAGTTATCC TGGGTTTGTCTGTCTATGGTGATATTCACTCATGCCTTAAAAACACTGCACAGAAATTGG GATTGGGAGTCTGAATATACATTGTTTATGTCAGCCTTGAAGGTAAATAAAAATAATGCC AAATTATGGAATAATGTGGGTCACGCTCTGGAAAATGAAAAGAACTTTGAGAGAGCTTTG AAATACTTCTTACAGGCTACCCATGTTCAACCAGATGATATTGGTGCCCACATGAATGTT GGAAGAACTTATAAAAATTTAAATAGAACCAAAGAAGCTGAAGAATCTTACATGATGGCT AAGTCACTGATGCCTCAAGTTATTCCTGGTAAAAAATATGCAGCTAGAATTGCACCTAAC CATTTAAATGTTTATATTAATCTGGCCAATCTGATTCGAGCAAATGAGTCCCGACTGGAG GAAGCAGATCAGCTGTACCGACAAGCAATAAGCATGAGGCCTGACTTCAAGCAGGCTTAC ATTAGCAGAGGAGAATTGCTTTTAAAAATGAATAAACCCTCCAAAGCAAAGGAAGCATAT CTTAAAGCACTAGAACTGGACAGAAACAATGCAGATCTTTGGTACAACTTGGCAATTGTT CATATCGAACTTAAAGAACCAAATGAAGCCCTGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGATAACCCAGCTGCTGTAAGCCCAACTCCTACAAGACAGCTAACTTTTAACTACCTC CTTCCTGTGAATGCTTGGCTTCTGTTAAATCCTTCAGAGCTCTGCTGTGATTGGACAATG GGAACAATACCACTTATAGAGTCATTTCTAGATGTTCGAAATCTTGCCACATTTATTTTT TTTTGCTTTTTGGGGGCTTTAGGAGTATTCAGTCTCAGATACTCTGGTGATTCCTCCAAG ACTGTTTTAATGGCACTTTGTTTAATGGCGTTACCATTTATTCCTGCATCAAACCTTTTT TTTCCCGTTGGATTTGTTGTTGCTGAGAGAGTTTTATATGTTCCTAGCATGGGGTTCTGT ATTTTGGTAGCCCATGGATGGCAGAAAATATCTAACAAAAGTATATTAAAAAAGTTATCC TGGGTTTGTCTGTCTATGGTGATATTCACTCATGCCTTAAAAACACTGCACAGAAATTGG GATTGGGAGTCTGAATATACATTGTTTATGTCAGCCTTGAAGGTAAATAAAAATAATGCC AAATTATGGAATAATGTGGGTCACGCTCTGGAAAATGAAAAGAACTTTGAGAGAGCTTTG AAATACTTCTTACAGGCTACCCATGTTCAACCAGATGATATTGGTGCCCACATGAATGTT GGAAGAACTTATAAAAATTTAAATAGAACCAAAGAAGCTGAAGAATCTTACATGATGGCT AAGTCACTGATGCCTCAAGTTATTCCTGGTAAAAAATATGCAGCTAGAATTGCACCTAAC CATTTAAATGTTTATATTAATCTGGCCAATCTGATTCGAGCAAATGAGTCCCGACTGGAG GAAGCAGATCAGCTGTACCGACAAGCAATAAGCATGAGGCCTGACTTCAAGCAGGCTTAC ATTAGCAGAGGAGAATTGCTTTTAAAAATGAATAAACCCTCCAAAGCAAAGGAAGCATAT CTTAAAGCACTAGAACTGGACAGAAACAATGCAGATCTTTGGTACAACTTGGCAATTGTT CATATCGAACTTAAAGAACCAAATGAAGCCCTGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 158-253, - strand, RNAz p=0.507125 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 158-253, - strand, RNAz p=0.507125 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-253, gnl|bosTau2|chr10 (47414543-47414795) | |
| 1-253, gnl|canFam2|chr15 (32326757-32327031) | |
| 1-253, gnl|danRer3|chr25 (12437396-12437139) | |
| 1-253, gnl|dasNov1|scaffold_75846 (7662-7886) | |
| 1-253, gnl|echTel1|scaffold_232246 (5602-5328) | |
| 1-253, gnl|fr1|chrUn (245535628-245535367) | |
| 1-253, gnl|galGal2|chr1 (39666589-39666850) | |
| 1-253, gnl|hg17|chr12 (87062574-87062848) | |
| 1-253, gnl|Hg17|chr12 (87062576-87062828) | |
| 1-253, gnl|loxAfr1|scaffold_216434 (822-548) | |
| 1-253, gnl|mm7|chr10 (99952918-99952647) | |
| 1-253, gnl|Mm7|chr10 (99952914-99952662) | |
| 1-253, gnl|monDom2|scaffold_36 (24495719-24495989) | |
| 1-253, gnl|oryCun1|scaffold_130182 (8326-8603) | |
| 1-253, gnl|panTro1|chr10 (89195650-89195924) | |
| 1-253, gnl|rheMac2|chr11 (89290342-89290617) | |
| 1-253, gnl|rn3|chr7 (38139968-38139698) | |
| 1-253, gnl|tetNig1|chr13 (11915997-11916256) | |
| 1-253, gnl|xenTro1|scaffold_237 (1146615-1146346) | |
| 517-634, gnl|bosTau2|chr10 (47424762-47424879) | |
| 517-634, gnl|Hg17|chr12 (87072447-87072564) | |
| 517-634, gnl|Mm7|chr10 (99943807-99943690) | |
| 740-908, gnl|bosTau2|chr10 (47432988-47433156) | |
| 740-908, gnl|canFam2|chr15 (32345082-32345267) | |
| 740-908, gnl|danRer3|chr25 (12421001-12420803) | |
| 740-908, gnl|dasNov1|scaffold_36047 (3184-3371) | |
| 740-908, gnl|echTel1|scaffold_289339 (922-733) | |
| 740-908, gnl|fr1|chrUn (154724507-154724318) | |
| 740-908, gnl|galGal2|chr1 (39677782-39677970) | |
| 740-908, gnl|hg17|chr12 (87086682-87086871) | |
| 740-908, gnl|Hg17|chr12 (87086699-87086867) | |
| 740-908, gnl|loxAfr1|scaffold_29971 (14250-14061) | |
| 740-908, gnl|mm7|chr10 (99937069-99936879) | |
| 740-908, gnl|Mm7|chr10 (99937049-99936881) | |
| 740-908, gnl|monDom2|scaffold_36 (24526281-24526470) | |
| 740-908, gnl|oryCun1|scaffold_211312 (105344-105544) | |
| 740-908, gnl|panTro1|chr10 (89220650-89220839) | |
| 740-908, gnl|rheMac2|chr11 (89314686-89314875) | |
| 740-908, gnl|rn3|chr7 (38120164-38119976) | |
| 740-908, gnl|tetNig1|chr13 (11919623-11919807) | |
| 740-908, gnl|xenTro1|scaffold_237 (1136349-1136161) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-253, gnl|bosTau2|chr10 (47414543-47414795) | |
| 1-253, gnl|canFam2|chr15 (32326757-32327031) | |
| 1-253, gnl|danRer3|chr25 (12437396-12437139) | |
| 1-253, gnl|dasNov1|scaffold_75846 (7662-7886) | |
| 1-253, gnl|echTel1|scaffold_232246 (5602-5328) | |
| 1-253, gnl|fr1|chrUn (245535628-245535367) | |
| 1-253, gnl|galGal2|chr1 (39666589-39666850) | |
| 1-253, gnl|hg17|chr12 (87062574-87062848) | |
| 1-253, gnl|Hg17|chr12 (87062576-87062828) | |
| 1-253, gnl|loxAfr1|scaffold_216434 (822-548) | |
| 1-253, gnl|mm7|chr10 (99952918-99952647) | |
| 1-253, gnl|Mm7|chr10 (99952914-99952662) | |
| 1-253, gnl|monDom2|scaffold_36 (24495719-24495989) | |
| 1-253, gnl|oryCun1|scaffold_130182 (8326-8603) | |
| 1-253, gnl|panTro1|chr10 (89195650-89195924) | |
| 1-253, gnl|rheMac2|chr11 (89290342-89290617) | |
| 1-253, gnl|rn3|chr7 (38139968-38139698) | |
| 1-253, gnl|tetNig1|chr13 (11915997-11916256) | |
| 1-253, gnl|xenTro1|scaffold_237 (1146615-1146346) | |
| 517-634, gnl|bosTau2|chr10 (47424762-47424879) | |
| 517-634, gnl|Hg17|chr12 (87072447-87072564) | |
| 517-634, gnl|Mm7|chr10 (99943807-99943690) | |
| 740-908, gnl|bosTau2|chr10 (47432988-47433156) | |
| 740-908, gnl|canFam2|chr15 (32345082-32345267) | |
| 740-908, gnl|danRer3|chr25 (12421001-12420803) | |
| 740-908, gnl|dasNov1|scaffold_36047 (3184-3371) | |
| 740-908, gnl|echTel1|scaffold_289339 (922-733) | |
| 740-908, gnl|fr1|chrUn (154724507-154724318) | |
| 740-908, gnl|galGal2|chr1 (39677782-39677970) | |
| 740-908, gnl|hg17|chr12 (87086682-87086871) | |
| 740-908, gnl|Hg17|chr12 (87086699-87086867) | |
| 740-908, gnl|loxAfr1|scaffold_29971 (14250-14061) | |
| 740-908, gnl|mm7|chr10 (99937069-99936879) | |
| 740-908, gnl|Mm7|chr10 (99937049-99936881) | |
| 740-908, gnl|monDom2|scaffold_36 (24526281-24526470) | |
| 740-908, gnl|oryCun1|scaffold_211312 (105344-105544) | |
| 740-908, gnl|panTro1|chr10 (89220650-89220839) | |
| 740-908, gnl|rheMac2|chr11 (89314686-89314875) | |
| 740-908, gnl|rn3|chr7 (38120164-38119976) | |
| 740-908, gnl|tetNig1|chr13 (11919623-11919807) | |
| 740-908, gnl|xenTro1|scaffold_237 (1136349-1136161) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| tbr (0.154178) | |
| eje (0.0988338) |