Ss1.1-Pig4-TMW8035M04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACTGCAAATGGGCTCAAACGAAATCCACAGGGGCCAGGAACACAGAAGGGGTGGCTTC GAGTCCCCCTCCCAGGCAGGCTAGCACGTCTCCCAGCTCTGCCTCCAGACCCAGACCCAC TTTGATGACAAAGGCGGGCTGCTCCTCCCGGCTGTGGCCGTGGCTGGGACGCCCCGGAGC CTGGACAGCAGCAGGCGAGGCTCAGGGACCCCCCTCCACCTCCTCCACCACCTCCTCGTC CATGTCCTTGTCCTCCGCGTTGCCGTGGCACATCGCGGGGACACCCAGGCCCTGGTGCAC GGCGTCCAGGGCCCGCTGGCTCACGTAGTAGGAGAGTCTGGCCGAGGGCAGTCTCTTCTG CATCTCCTCCAGGTACCTGTAGGCCGTGCGCAGGTCCCCCGCCTGCACGTGGCCCTCCAC CAGGAAGCCGCACACGTCCCCGAGGCGAACCGTGCTGTCGGGGCCCAGCTCCTCCAGGAG CAGCTGGCCCTGCCTGAGTGCCTCCTCGGGATCCTCGGCGTACATCCTGCGGGCTTGCAT GAAGCGCTTCACCAGCGTCATCCTGCTCTGCAGCTGCGCCAGCCGGGCCTCGTGGTCCAG GGGGCTCCGGGCCTTGGCCTTGGCCAGGCACTTGTAGGCCTCGGTCAGCGCCCCGTGGGC CTTGTCGTAGTTCTGGTACTCATCGACCTCCACCTGGGCGCAGGCGTCGTAGAAGCCGGC CAGGAGCTCGGGGGCGCGGCCCCTGGTGTAGAAGCTGATGATGTTCTTCATGATCTCGGG GTCCCGCCGCCAGTCCAGGGACTGCAGGTAGTTGGCGGCCATCACGTAAACCTCCTTCTG CCTCGAGACGCCCGCAAAGAACACGATCTTCTCCGTGTCCCCAGACTTGAGCAGCGCGCG CATGGCCTTGAGCCGGTCGCCAGCCTGCGTGTACTTCTTGGCAGCCAGGTGGTAGCTGCC CTGGCGCATGCAGCAGCTGGCCACCTGCTCCAGCAGCTCACGCCGCGACTCTTCCGACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACTGCAAATGGGCTCAAACGAAATCCACAGGGGCCAGGAACACAGAAGGGGTGGCTTC GAGTCCCCCTCCCAGGCAGGCTAGCACGTCTCCCAGCTCTGCCTCCAGACCCAGACCCAC TTTGATGACAAAGGCGGGCTGCTCCTCCCGGCTGTGGCCGTGGCTGGGACGCCCCGGAGC CTGGACAGCAGCAGGCGAGGCTCAGGGACCCCCCTCCACCTCCTCCACCACCTCCTCGTC CATGTCCTTGTCCTCCGCGTTGCCGTGGCACATCGCGGGGACACCCAGGCCCTGGTGCAC GGCGTCCAGGGCCCGCTGGCTCACGTAGTAGGAGAGTCTGGCCGAGGGCAGTCTCTTCTG CATCTCCTCCAGGTACCTGTAGGCCGTGCGCAGGTCCCCCGCCTGCACGTGGCCCTCCAC CAGGAAGCCGCACACGTCCCCGAGGCGAACCGTGCTGTCGGGGCCCAGCTCCTCCAGGAG CAGCTGGCCCTGCCTGAGTGCCTCCTCGGGATCCTCGGCGTACATCCTGCGGGCTTGCAT GAAGCGCTTCACCAGCGTCATCCTGCTCTGCAGCTGCGCCAGCCGGGCCTCGTGGTCCAG GGGGCTCCGGGCCTTGGCCTTGGCCAGGCACTTGTAGGCCTCGGTCAGCGCCCCGTGGGC CTTGTCGTAGTTCTGGTACTCATCGACCTCCACCTGGGCGCAGGCGTCGTAGAAGCCGGC CAGGAGCTCGGGGGCGCGGCCCCTGGTGTAGAAGCTGATGATGTTCTTCATGATCTCGGG GTCCCGCCGCCAGTCCAGGGACTGCAGGTAGTTGGCGGCCATCACGTAAACCTCCTTCTG CCTCGAGACGCCCGCAAAGAACACGATCTTCTCCGTGTCCCCAGACTTGAGCAGCGCGCG CATGGCCTTGAGCCGGTCGCCAGCCTGCGTGTACTTCTTGGCAGCCAGGTGGTAGCTGCC CTGGCGCATGCAGCAGCTGGCCACCTGCTCCAGCAGCTCACGCCGCGACTCTTCCGACAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 3-385, gnl|bosTau2|chr25 (2756231-2755818) | |
| 3-385, gnl|Hg17|chr16 (1500702-1501153) | |
| 691-911, gnl|bosTau2|chr25 (2749262-2749042) | |
| 691-911, gnl|canFam2|chr6 (42343241-42343024) | |
| 691-911, gnl|danRer3|chr24 (30569728-30569945) | |
| 691-911, gnl|dasNov1|scaffold_111880 (967-1168) | |
| 691-911, gnl|echTel1|scaffold_111383 (691-474) | |
| 691-911, gnl|fr1|chrUn (22064849-22065066) | |
| 691-911, gnl|galGal2|chr14 (20451893-20452110) | |
| 691-911, gnl|hg17|chr16 (1510131-1510348) | |
| 691-911, gnl|Hg17|chr16 (1510130-1510350) | |
| 691-911, gnl|loxAfr1|scaffold_136805 (164-381) | |
| 691-911, gnl|mm7|chr17 (23276075-23275858) | |
| 691-911, gnl|Mm7|chr17 (23276074-23275854) | |
| 691-911, gnl|monDom2|scaffold_5 (122479737-122479520) | |
| 691-911, gnl|oryCun1|scaffold_76265 (396-179) | |
| 691-911, gnl|panTro1|chr18 (1583833-1584049) | |
| 691-911, gnl|rheMac2|chr20 (1509090-1509307) | |
| 691-911, gnl|rn3|chr10 (14341946-14341729) | |
| 691-911, gnl|tetNig1|chr2 (4893506-4893289) | |
| 691-911, gnl|xenTro1|scaffold_12 (3533076-3533292) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-385, gnl|bosTau2|chr25 (2756231-2755818) | |
| 3-385, gnl|Hg17|chr16 (1500702-1501153) | |
| 691-911, gnl|bosTau2|chr25 (2749262-2749042) | |
| 691-911, gnl|canFam2|chr6 (42343241-42343024) | |
| 691-911, gnl|danRer3|chr24 (30569728-30569945) | |
| 691-911, gnl|dasNov1|scaffold_111880 (967-1168) | |
| 691-911, gnl|echTel1|scaffold_111383 (691-474) | |
| 691-911, gnl|fr1|chrUn (22064849-22065066) | |
| 691-911, gnl|galGal2|chr14 (20451893-20452110) | |
| 691-911, gnl|hg17|chr16 (1510131-1510348) | |
| 691-911, gnl|Hg17|chr16 (1510130-1510350) | |
| 691-911, gnl|loxAfr1|scaffold_136805 (164-381) | |
| 691-911, gnl|mm7|chr17 (23276075-23275858) | |
| 691-911, gnl|Mm7|chr17 (23276074-23275854) | |
| 691-911, gnl|monDom2|scaffold_5 (122479737-122479520) | |
| 691-911, gnl|oryCun1|scaffold_76265 (396-179) | |
| 691-911, gnl|panTro1|chr18 (1583833-1584049) | |
| 691-911, gnl|rheMac2|chr20 (1509090-1509307) | |
| 691-911, gnl|rn3|chr10 (14341946-14341729) | |
| 691-911, gnl|tetNig1|chr2 (4893506-4893289) | |
| 691-911, gnl|xenTro1|scaffold_12 (3533076-3533292) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.253004) | |
| pgl (0.118483) | |
| ecc (0.115035) |