Non-Coding RNA Search

Ss1.1-Pig4-TMW8035M08.3

Sequence:


               
               GTTTTAGAATACACACTGAAAAAGTCAAACTCTTCTCCCTGCTTAGCTTCTGATCCTCAC
TATTTTCTGATTTTCAAAAGTTGTACTATACAGAATTCCTGTTTACTTTTTCCCATGAAA
AGAGGACCAAATGATTTTTTAGATGAATGGAATAACAATTGTGTAGCATCACATGTTAAC
GATACTTTTATTTGTTGAATTTTTTTTAACCTGACATACACTTTACCTGATCTACTTTGA
CCACATTCTATCTCCTTAATTATAATTCTGTCCTGTTTCTGGACTGCTAGAATCTGGCCT
CTGACCATCTTAAAGTGCTAATATATGCCTGCAGGGTTTAAAAAAAAATGGTTTAGAGCG
ATACACTTGATGATAGCTGATATCCACTGCCCCAGCATCACATCCAGCTCTCTTATTTGT
CCACAGATAATGAAAACAAAGGAGGGAAAACTCATCAAAAAATTCTCCTTCAGTGAAGGT
TCGTGCTGGTTTAGTGCCCATGACCCTGGTAGTGTCTACTGTGTTCACTCCCAGTTGAAG
TATCCATGTGTTTCTGGGCAGCTTTTCTGCCCAGTGTGATCCTGAGATGGCTTCCCCGCC
ACCCAGAGTGTGGTCCCTGGCCGCCTCCTTCTCCTGTTCCCTTAGCCTGAAGCTGGCTCT
GGAGCAGGGGCTAGTCCTGGGGTGGGTGTGTGCGTGGGTGCCCACGCGCGTGCAAGTGCG
TGCTGGCTCAGGAATTGTCTCCTCCCTGTCTGGCCAGTGAGGCGTGGGACAGAAATGGTC
CCCCTGCTGGCCCTGGTGAGTGACTGCCTGTGCTCTGGGCCGCATCTCCCCTGGAGACGT
GGCTTGTGGCTTTGGCTGGCTTCCCTGATAGAGGAGAACACTGGATTATGGGACATGTTT
TCATCATGTTTGCCATTACGTATGTCTCTTAGCGTAGAGGATCAAAACTCTTGCTGGTGA
GTACTCCCTGGATGACTTTCCAAAATGACCTAACAATGATTTCTCATCAGCAAGATGGCA
AATAGTAGTTTTGGCAAACCCTCTATGAAACAAAGGTACATTTTCAACTCAAAAACTACT
CCTACAATGGGTTTTAGATGTAAATTATGGCTAAACATTTCTGTAACTCATAGCTACCCT
GCAAATTGGTAGACTATATGCTTGATTCGAAGGCACTCAATTTTAAGCCAGAGGAAAAGA
AGCTTTATTTAGCACTAATTTCATCCTATCAGATGGCCGCGGTGGCTGTGATAACCTCCA
GAGTGAAGATTGTTCCTTCCGTAACACTCATGGTCAGCTTCCCCAAAGGCTGGGGAACCT
CCAGAGGCTGGGGAACTGTGGGCTGAGAGCCGCAAGGGATCCTGTCTACTGGGTGTGGAA
GAACCTAATTTTATGTTAATTACTATCACTCGGAAAAAAGAGAAAGACATTCACCCTCTG
ATTGGCTGGTGCTGAGAGCTGTGGGTTAAATTTGAAAATTGTATTTAAAATAAGAACATT
TTATCTTTTAAATCCTATTCTCCCTTCTGCGTTTTCAAAAACATGGAATTAAGGCTAATG
TGCTTGCTTTTGTTTTCTTTGGTAATCTTGAATTTTGTAGCTTTTAAAACTAGAAACCAT
TGTTCTGACAAGGCAAGCCACTGTAGTATATAAACACAACTTTATTAAACAATGCCCTGT
AGATGCTTTTCCCAATGTATCTGGCAGTCTTTGTCGTTGTTTATATCCTGGGGATAAGGG
GAACTAGGCTAGCAGTTCTAATGTAACATTCTTTAAGCATATCTTAATATAGTATTTAAG
TAAATGGTCTAATTTCTACATAATTATTGCACTGAACTGTCTTTTTTTATAAGGTGTTTA
AATAAGCTCACTAATTCAAGGCACTAGCCACTTGTGCATCAGAGTGCTTGAATTCAGTAG
CTTACAGCATTATTTATGAAGGAAAAATATATAAATATGAAGTACCTCATGTTGAATGTT
ATTGTACTGTATTTTTAATGTAACAGTGCAGATCTTGTTAGACACATGAATGTGTATAAT
CATGTTAAATGCAAATAAAATAAAACCGGTTCATAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTAGAATACACACTGAAAAAGTCAAACTCTTCTCCCTGCTTAGCTTCTGATCCTCAC
TATTTTCTGATTTTCAAAAGTTGTACTATACAGAATTCCTGTTTACTTTTTCCCATGAAA
AGAGGACCAAATGATTTTTTAGATGAATGGAATAACAATTGTGTAGCATCACATGTTAAC
GATACTTTTATTTGTTGAATTTTTTTTAACCTGACATACACTTTACCTGATCTACTTTGA
CCACATTCTATCTCCTTAATTATAATTCTGTCCTGTTTCTGGACTGCTAGAATCTGGCCT
CTGACCATCTTAAAGTGCTAATATATGCCTGCAGGGTTTAAAAAAAAATGGTTTAGAGCG
ATACACTTGATGATAGCTGATATCCACTGCCCCAGCATCACATCCAGCTCTCTTATTTGT
CCACAGATAATGAAAACAAAGGAGGGAAAACTCATCAAAAAATTCTCCTTCAGTGAAGGT
TCGTGCTGGTTTAGTGCCCATGACCCTGGTAGTGTCTACTGTGTTCACTCCCAGTTGAAG
TATCCATGTGTTTCTGGGCAGCTTTTCTGCCCAGTGTGATCCTGAGATGGCTTCCCCGCC
ACCCAGAGTGTGGTCCCTGGCCGCCTCCTTCTCCTGTTCCCTTAGCCTGAAGCTGGCTCT
GGAGCAGGGGCTAGTCCTGGGGTGGGTGTGTGCGTGGGTGCCCACGCGCGTGCAAGTGCG
TGCTGGCTCAGGAATTGTCTCCTCCCTGTCTGGCCAGTGAGGCGTGGGACAGAAATGGTC
CCCCTGCTGGCCCTGGTGAGTGACTGCCTGTGCTCTGGGCCGCATCTCCCCTGGAGACGT
GGCTTGTGGCTTTGGCTGGCTTCCCTGATAGAGGAGAACACTGGATTATGGGACATGTTT
TCATCATGTTTGCCATTACGTATGTCTCTTAGCGTAGAGGATCAAAACTCTTGCTGGTGA
GTACTCCCTGGATGACTTTCCAAAATGACCTAACAATGATTTCTCATCAGCAAGATGGCA
AATAGTAGTTTTGGCAAACCCTCTATGAAACAAAGGTACATTTTCAACTCAAAAACTACT
CCTACAATGGGTTTTAGATGTAAATTATGGCTAAACATTTCTGTAACTCATAGCTACCCT
GCAAATTGGTAGACTATATGCTTGATTCGAAGGCACTCAATTTTAAGCCAGAGGAAAAGA
AGCTTTATTTAGCACTAATTTCATCCTATCAGATGGCCGCGGTGGCTGTGATAACCTCCA
GAGTGAAGATTGTTCCTTCCGTAACACTCATGGTCAGCTTCCCCAAAGGCTGGGGAACCT
CCAGAGGCTGGGGAACTGTGGGCTGAGAGCCGCAAGGGATCCTGTCTACTGGGTGTGGAA
GAACCTAATTTTATGTTAATTACTATCACTCGGAAAAAAGAGAAAGACATTCACCCTCTG
ATTGGCTGGTGCTGAGAGCTGTGGGTTAAATTTGAAAATTGTATTTAAAATAAGAACATT
TTATCTTTTAAATCCTATTCTCCCTTCTGCGTTTTCAAAAACATGGAATTAAGGCTAATG
TGCTTGCTTTTGTTTTCTTTGGTAATCTTGAATTTTGTAGCTTTTAAAACTAGAAACCAT
TGTTCTGACAAGGCAAGCCACTGTAGTATATAAACACAACTTTATTAAACAATGCCCTGT
AGATGCTTTTCCCAATGTATCTGGCAGTCTTTGTCGTTGTTTATATCCTGGGGATAAGGG
GAACTAGGCTAGCAGTTCTAATGTAACATTCTTTAAGCATATCTTAATATAGTATTTAAG
TAAATGGTCTAATTTCTACATAATTATTGCACTGAACTGTCTTTTTTTATAAGGTGTTTA
AATAAGCTCACTAATTCAAGGCACTAGCCACTTGTGCATCAGAGTGCTTGAATTCAGTAG
CTTACAGCATTATTTATGAAGGAAAAATATATAAATATGAAGTACCTCATGTTGAATGTT
ATTGTACTGTATTTTTAATGTAACAGTGCAGATCTTGTTAGACACATGAATGTGTATAAT
CATGTTAAATGCAAATAAAATAAAACCGGTTCATAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               481-784, - strand, RNAz p=0.966153
               

               
               1846-1954, + strand, RNAz p=0.94345

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               481-784, - strand, RNAz p=0.966153
               

               
               1846-1954, + strand, RNAz p=0.94345

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014962, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014962, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-2075, gnl|bosTau2|chr13 (896075-893987)
               

               
               17-2075, gnl|Hg17|chr20 (11853167-11855241)
               

               
               17-2075, gnl|Mm7|chr2 (138026208-138028275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-2075, gnl|bosTau2|chr13 (896075-893987)
               

               
               17-2075, gnl|Hg17|chr20 (11853167-11855241)
               

               
               17-2075, gnl|Mm7|chr2 (138026208-138028275)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               sin (0.524843)
               

               
               lyg (0.399308)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               lyg (0.399308)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	481-784, - strand, RNAz p=0.966153
	1846-1954, + strand, RNAz p=0.94345

	17-2075, gnl\|bosTau2\|chr13 (896075-893987)
	17-2075, gnl\|Hg17\|chr20 (11853167-11855241)
	17-2075, gnl\|Mm7\|chr2 (138026208-138028275)

	sin (0.524843)
	lyg (0.399308)
	fbs (0.350693)
	fco (0.314416)
	fat (0.294855)
	liv (0.292569)
	pla (0.267344)
	cbe (0.239234)
	ebs (0.236602)
	ton (0.1755)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	nje (0.16592)
	isp (0.150376)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)