Non-Coding RNA Search

Ss1.1-Pig4-TMW8035N19.3

Sequence:


               
               ACCGCGGCCGCTCCGGCTTTCTCCTGCCTGAGCCGCCCTCGACATCTCCTCCGTTCCGAA
ACAGGCTCGCTCTCTGGCGCCGCGTCCTCGCCGCCGCCCCGGCCTCCCAACCGGGCAGGA
GACCCGACTTGGCTCTGCCTCGGCGCTCCAGCGCGGCGGGGCCCCGCTGTCCGGACTGCC
GTATCTCCCCGCCGCCTTGGATCTGTAGAAAAGCATTCAAGACCATAACATTTAGATGAC
CAAAATGGATATCCGGGGTGCCGTGGATGCTGCCGTTCCAACCAACATCATTGCCGCCAA
GGCTGCGGAGGTTCGGGCAAACAAAGTGAACTGGCAGTCCTACCTTCAGGGGCAGATGAT
CTCTTCTGAAGACTGTGAATTCATTCAAAGATTTGAAATGAAGAGAAGTCCCGAGGAGAA
GCAGGAGATGCTTCAAACTGAAGGCAGTCAGTGTGCCAAGACGTTTATAAATCTGATGAC
TCATATCTCCAAAGAGCAGACAGTTCAGTACATACTCACCATGGTGGACGACACGCTGCA
GGAAAATCACCAGCGTGTTAGCATTTTCTTTGACTATGCAAAACGTAGCAAGAATACTGC
CTGGTCCTACTTTCTGCCAATGTTGAATCGCCAGGATCTCTTCACTGTTCATATGGCAGC
AAGGATCATTGCCAAGTTAGCAGCTTGGGGAAAAGAGCTGATGGAAGGCAGCGACCTAAA
TTACTATTTCAACTGGATAAAAACCCAGCTGAGCTCCCAGAAACTGCGTGGTAGCGGTGT
CGCTGTTGAAACAGGAACAGTCTCTTCAAGCGATAGCTCCCAGTACGTGCAGTGTGTGGC
CGGGTGTCTGCAGCTGATGCTCCGGGTCAACGAGTACCGCTTCGCCTGGGTGGAAGCAGA
CGGAGTCAACTGCATCATGGGGGTTCTGAGCAACAAGTGTGGCTTTCAGCTCCAGTATCA
GATGATCTTTTCCATATGGCTCCTGGCCTTCAGTCCTCAGATGTGTGAACACCTGCGACG
CTACAACATCATTCCCGTACTGTCCGACATTCTGCAAGAATCCGTCAAAGAGAAAGTGAC
GAGAATCATTCTCGCAGCATTCCGGAACTTCTTAGAAAAATCAACTGAAAGAGAAACTCG
CCAGGAGTATGCCTTGGCTCTGATTCAGTGCAAAGTCCTCAAACAGCTGGAGAACTTGGA
GCAGCAGAAGTATGACGATGAAGATATCAGTGAGGATATAAAGTTTCTTTTGGAAAAACT
TGGTGAGAGTGTCCAGGATCTTAGCTCATTTGATGAGTATAGTTCAGAACTTAAATCTGG
AAGATTGGAATGGAGTCCTGTGCACAAATCTGAGAAGTTTTGGAGAGAAAATGCTGTGAG
GCTGAATGAGAAAAACTATGAGCTCTTGAAAATTTTGACAAAACTCCTGGAGGTGTCGGA
TGACCCGCAAGTCTTAGCTGTCGCTGCTCACGACGTTGGCGAGTATGTGCGACATTACCC
CCGAGGCAAGCGGGTCATCGAGCAACTGGGCGGGAAGCAGCTGGTGATGAACCACATGCA
CCACGAGGACCAGCAGGTGCGCTACAACGCCCTCCTGGCTGTGCAGAAGCTCATGGTGCA
CAACTGGGAGTATCTCGGTAAACAGCTCCAATCCGAGCAACCTCAGACAGCAGCTGCCCG
GAGCTGAATGGGCCCCCCAGCCCTTCCCTCCCTGTGGCTGAAAACCTGGAGTGTGAATCT
CAGCAGTTGGGGTCGAGAACAAATGATTTCTCATGTTACGTGTCATTTTCTTCTGTTGTG
TAGCTTTTCCTAGTACTGATTTCCCATACAAGTGTTTGCCTGTTAAGTTGTATTAAAATA
GATGCTTTCCGTATCTAAAGAAAATAATACTGTTACATATGCTGCTTGTAATTTCTTATT
TATTGTTCTCTGGAAATGAATATAGAGTTATTAAAGGGTTCTCACTCCCAAAAAAAAAAA
CTCTTTCCTTGTTCCTTACTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGCGGCCGCTCCGGCTTTCTCCTGCCTGAGCCGCCCTCGACATCTCCTCCGTTCCGAA
ACAGGCTCGCTCTCTGGCGCCGCGTCCTCGCCGCCGCCCCGGCCTCCCAACCGGGCAGGA
GACCCGACTTGGCTCTGCCTCGGCGCTCCAGCGCGGCGGGGCCCCGCTGTCCGGACTGCC
GTATCTCCCCGCCGCCTTGGATCTGTAGAAAAGCATTCAAGACCATAACATTTAGATGAC
CAAAATGGATATCCGGGGTGCCGTGGATGCTGCCGTTCCAACCAACATCATTGCCGCCAA
GGCTGCGGAGGTTCGGGCAAACAAAGTGAACTGGCAGTCCTACCTTCAGGGGCAGATGAT
CTCTTCTGAAGACTGTGAATTCATTCAAAGATTTGAAATGAAGAGAAGTCCCGAGGAGAA
GCAGGAGATGCTTCAAACTGAAGGCAGTCAGTGTGCCAAGACGTTTATAAATCTGATGAC
TCATATCTCCAAAGAGCAGACAGTTCAGTACATACTCACCATGGTGGACGACACGCTGCA
GGAAAATCACCAGCGTGTTAGCATTTTCTTTGACTATGCAAAACGTAGCAAGAATACTGC
CTGGTCCTACTTTCTGCCAATGTTGAATCGCCAGGATCTCTTCACTGTTCATATGGCAGC
AAGGATCATTGCCAAGTTAGCAGCTTGGGGAAAAGAGCTGATGGAAGGCAGCGACCTAAA
TTACTATTTCAACTGGATAAAAACCCAGCTGAGCTCCCAGAAACTGCGTGGTAGCGGTGT
CGCTGTTGAAACAGGAACAGTCTCTTCAAGCGATAGCTCCCAGTACGTGCAGTGTGTGGC
CGGGTGTCTGCAGCTGATGCTCCGGGTCAACGAGTACCGCTTCGCCTGGGTGGAAGCAGA
CGGAGTCAACTGCATCATGGGGGTTCTGAGCAACAAGTGTGGCTTTCAGCTCCAGTATCA
GATGATCTTTTCCATATGGCTCCTGGCCTTCAGTCCTCAGATGTGTGAACACCTGCGACG
CTACAACATCATTCCCGTACTGTCCGACATTCTGCAAGAATCCGTCAAAGAGAAAGTGAC
GAGAATCATTCTCGCAGCATTCCGGAACTTCTTAGAAAAATCAACTGAAAGAGAAACTCG
CCAGGAGTATGCCTTGGCTCTGATTCAGTGCAAAGTCCTCAAACAGCTGGAGAACTTGGA
GCAGCAGAAGTATGACGATGAAGATATCAGTGAGGATATAAAGTTTCTTTTGGAAAAACT
TGGTGAGAGTGTCCAGGATCTTAGCTCATTTGATGAGTATAGTTCAGAACTTAAATCTGG
AAGATTGGAATGGAGTCCTGTGCACAAATCTGAGAAGTTTTGGAGAGAAAATGCTGTGAG
GCTGAATGAGAAAAACTATGAGCTCTTGAAAATTTTGACAAAACTCCTGGAGGTGTCGGA
TGACCCGCAAGTCTTAGCTGTCGCTGCTCACGACGTTGGCGAGTATGTGCGACATTACCC
CCGAGGCAAGCGGGTCATCGAGCAACTGGGCGGGAAGCAGCTGGTGATGAACCACATGCA
CCACGAGGACCAGCAGGTGCGCTACAACGCCCTCCTGGCTGTGCAGAAGCTCATGGTGCA
CAACTGGGAGTATCTCGGTAAACAGCTCCAATCCGAGCAACCTCAGACAGCAGCTGCCCG
GAGCTGAATGGGCCCCCCAGCCCTTCCCTCCCTGTGGCTGAAAACCTGGAGTGTGAATCT
CAGCAGTTGGGGTCGAGAACAAATGATTTCTCATGTTACGTGTCATTTTCTTCTGTTGTG
TAGCTTTTCCTAGTACTGATTTCCCATACAAGTGTTTGCCTGTTAAGTTGTATTAAAATA
GATGCTTTCCGTATCTAAAGAAAATAATACTGTTACATATGCTGCTTGTAATTTCTTATT
TATTGTTCTCTGGAAATGAATATAGAGTTATTAAAGGGTTCTCACTCCCAAAAAAAAAAA
CTCTTTCCTTGTTCCTTACTGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523554|ref|NP_999405.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523554|ref|NP_999405.1|

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               313-472, - strand, RNAz p=0.969631
               

               
               592-831, - strand, RNAz p=0.876988
               

               
               992-1191, - strand, RNAz p=0.933459
               

               
               1232-1351, - strand, RNAz p=0.983591
               

               
               1512-1709, - strand, RNAz p=0.746785

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-472, - strand, RNAz p=0.969631
               

               
               592-831, - strand, RNAz p=0.876988
               

               
               992-1191, - strand, RNAz p=0.933459
               

               
               1232-1351, - strand, RNAz p=0.983591
               

               
               1512-1709, - strand, RNAz p=0.746785

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               154-1709, gnl|bosTau2|chr13 (27869479-27867936)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-1709, gnl|bosTau2|chr13 (27869479-27867936)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               fcc (0.791139)
               

               
               ton (0.351)
               

               
               cte (0.29274)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.791139)
               

               
               ton (0.351)
               

               
               cte (0.29274)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	313-472, - strand, RNAz p=0.969631
	592-831, - strand, RNAz p=0.876988
	992-1191, - strand, RNAz p=0.933459
	1232-1351, - strand, RNAz p=0.983591
	1512-1709, - strand, RNAz p=0.746785

	fcc (0.791139)
	ton (0.351)
	cte (0.29274)
	cga (0.279096)
	che (0.272628)
	eru (0.240096)
	ece (0.229305)
	cty (0.20816)
	aor (0.195274)
	sto (0.179824)
	fbs (0.175346)
	eye (0.170503)
	nje (0.16592)
	fco (0.157208)
	hlv (0.139256)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)