Non-Coding RNA Search

Ss1.1-Pig4-TMW8035N24.5

Sequence:


               
               ATTGTCTGCTAGCACCCTAGTGTTAGGACAAAAAAGATGCCACTCTAAAAATGAATTACA
TTTCTCACCAGCCTATATACTATTCTACTGAAGTAATCAGTGACATCCTAAAGAATTATG
CATTAAGAAAATCCTTACTGTGCCCTTTGAAAAGCTGTTCAAAACTCAATCATGATCTTT
CATCTCGGTATCTACAGTGAAATATTTCAGTGTGATAAGCTTCCAAATTCTGAACAAGTG
ATCCACTTTTATATTGCAAGTCTCTACCAGAACCCCATTCATTTTTTAAGGTGTACATTT
GTTTTCAAGATCAAGAATACTGAGCTAGCTTTAAGTAGCAAACTGATTTATATATGCAAT
TATACGATGCATTAAGATGAATGATAGCCTTTACGTACTGAAAACTTTACTGCAGATGTT
TTGTTTTAAAGATAGCTTTGCATACTAAATGCAATTAATTTTGTAAAATTAATTATGTTA
AGCCGTATGTTCAGACACTTTCTGCCATGGCCAAAAAGTATGTATGAAAGTACGTGTGTA
TTTTCTGCGACAGGATGCCGATGTCCTACCTGATCGTGTAGTGACACTTCAGTTATCTAT
GCATTCTTTGTATCTGTGATTCGGTAAACAGGCAGCCATGTTCACTATGCCTTGTATGTC
CTATCATTTTTTATTAACCTGTTAAATACAGCTTAAAATATTTTTATTTTATTTATTCTA
TTTTTACTGAAATATACTGCATTATTGTGTTACTGTATTTACTGGATATTATCTCACAGT
GTATCCAGGTCTAAGTAATCTCAGTGAACTATACATTGCCTAAAAGGTGGTTTTGTAATG
ATTTGTAGTCACATTTTTATTGGAAAATGTAGAAGAAAAGGCAAAATACTTAAAAAGTTC
CTTTTATTTTTTAAAAGCAGCTAGATAGACGCAGACGTGCCACCTCATATATGTGCTCCT
TGGCCGCATCAAGGGCACTAGCCAACATGCCTAAACTAAAAACTTTACTTTGCAAACTTA
AAGCACTGCTTTGTGCTTCGTTTTTATATTCTTCACAACACGTGCGAACTAAACTACGAG
ATGTCCACATGTCCACGTGCCCTTTGTTTCAACCTGGATTTATGAGCACCTAATTTAGAA
CCATTGTTTTTGTTTGTGTCTGTCTTACTGCATGAAGGGACATTAGACTCATTTACATTA
AAATAAGTTCTTGGTGATAAACTGTTGGCACTGCTACTTTTTAAAAAATTCCCACCTTAT
GATTTTATGACATTTGTGCAACGATTCTACACAAGGTCATTTAATAGAAGCCCTAAATCT
TTCCTCCATTTCTTAAATGACACAGTCACTTAAGTACTGCAACACAAATTCAACATAAAT
AATGTGAAAATCATCTCCCTGATGTTAGCACAATGTAACTAGTAAAACCATTAGCTCTCT
CGTTTGTCAGACTTGACTTAACCCAGTACACAGCTAACGTGTGTTATGCAGCCAGTAAAA
TGAGTTTAACTTATTTCAGCTTCAGGGAAAATATATTGCTCGTACTTTATCAGTGAGAGC
GCTCCCTGCCATCCACAGCAGCTTGTTTATCCCAAAAAGAATACTTGGTTTTGCTTTCTG
CCCCTTTCGCTGTTGACCACTTTTATATATTTAAATGTAATATGAAGTGAGAATAAACTT
AGCTGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGTCTGCTAGCACCCTAGTGTTAGGACAAAAAAGATGCCACTCTAAAAATGAATTACA
TTTCTCACCAGCCTATATACTATTCTACTGAAGTAATCAGTGACATCCTAAAGAATTATG
CATTAAGAAAATCCTTACTGTGCCCTTTGAAAAGCTGTTCAAAACTCAATCATGATCTTT
CATCTCGGTATCTACAGTGAAATATTTCAGTGTGATAAGCTTCCAAATTCTGAACAAGTG
ATCCACTTTTATATTGCAAGTCTCTACCAGAACCCCATTCATTTTTTAAGGTGTACATTT
GTTTTCAAGATCAAGAATACTGAGCTAGCTTTAAGTAGCAAACTGATTTATATATGCAAT
TATACGATGCATTAAGATGAATGATAGCCTTTACGTACTGAAAACTTTACTGCAGATGTT
TTGTTTTAAAGATAGCTTTGCATACTAAATGCAATTAATTTTGTAAAATTAATTATGTTA
AGCCGTATGTTCAGACACTTTCTGCCATGGCCAAAAAGTATGTATGAAAGTACGTGTGTA
TTTTCTGCGACAGGATGCCGATGTCCTACCTGATCGTGTAGTGACACTTCAGTTATCTAT
GCATTCTTTGTATCTGTGATTCGGTAAACAGGCAGCCATGTTCACTATGCCTTGTATGTC
CTATCATTTTTTATTAACCTGTTAAATACAGCTTAAAATATTTTTATTTTATTTATTCTA
TTTTTACTGAAATATACTGCATTATTGTGTTACTGTATTTACTGGATATTATCTCACAGT
GTATCCAGGTCTAAGTAATCTCAGTGAACTATACATTGCCTAAAAGGTGGTTTTGTAATG
ATTTGTAGTCACATTTTTATTGGAAAATGTAGAAGAAAAGGCAAAATACTTAAAAAGTTC
CTTTTATTTTTTAAAAGCAGCTAGATAGACGCAGACGTGCCACCTCATATATGTGCTCCT
TGGCCGCATCAAGGGCACTAGCCAACATGCCTAAACTAAAAACTTTACTTTGCAAACTTA
AAGCACTGCTTTGTGCTTCGTTTTTATATTCTTCACAACACGTGCGAACTAAACTACGAG
ATGTCCACATGTCCACGTGCCCTTTGTTTCAACCTGGATTTATGAGCACCTAATTTAGAA
CCATTGTTTTTGTTTGTGTCTGTCTTACTGCATGAAGGGACATTAGACTCATTTACATTA
AAATAAGTTCTTGGTGATAAACTGTTGGCACTGCTACTTTTTAAAAAATTCCCACCTTAT
GATTTTATGACATTTGTGCAACGATTCTACACAAGGTCATTTAATAGAAGCCCTAAATCT
TTCCTCCATTTCTTAAATGACACAGTCACTTAAGTACTGCAACACAAATTCAACATAAAT
AATGTGAAAATCATCTCCCTGATGTTAGCACAATGTAACTAGTAAAACCATTAGCTCTCT
CGTTTGTCAGACTTGACTTAACCCAGTACACAGCTAACGTGTGTTATGCAGCCAGTAAAA
TGAGTTTAACTTATTTCAGCTTCAGGGAAAATATATTGCTCGTACTTTATCAGTGAGAGC
GCTCCCTGCCATCCACAGCAGCTTGTTTATCCCAAAAAGAATACTTGGTTTTGCTTTCTG
CCCCTTTCGCTGTTGACCACTTTTATATATTTAAATGTAATATGAAGTGAGAATAAACTT
AGCTGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               706-813, - strand, RNAz p=0.962763
               

               
               933-1046, - strand, RNAz p=0.605597

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               706-813, - strand, RNAz p=0.962763
               

               
               933-1046, - strand, RNAz p=0.605597

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1692, gnl|bosTau2|chr6 (31644387-31642677)
               

               
               2-1692, gnl|Hg17|chr4 (40656958-40655248)
               

               
               2-1692, gnl|Mm7|chr5 (65656171-65654369)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1692, gnl|bosTau2|chr6 (31644387-31642677)
               

               
               2-1692, gnl|Hg17|chr4 (40656958-40655248)
               

               
               2-1692, gnl|Mm7|chr5 (65656171-65654369)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               isp (0.75188)
               

               
               liv (0.731422)
               

               
               eye (0.511509)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               ste (0.270416)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.75188)
               

               
               liv (0.731422)
               

               
               eye (0.511509)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               ste (0.270416)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	706-813, - strand, RNAz p=0.962763
	933-1046, - strand, RNAz p=0.605597

	2-1692, gnl\|bosTau2\|chr6 (31644387-31642677)
	2-1692, gnl\|Hg17\|chr4 (40656958-40655248)
	2-1692, gnl\|Mm7\|chr5 (65656171-65654369)

	isp (0.75188)
	liv (0.731422)
	eye (0.511509)
	mgp (0.461361)
	ski (0.440205)
	kid (0.389206)
	ret (0.3862)
	elu (0.385356)
	spc (0.340097)
	tbr (0.308356)
	ste (0.270416)
	aor (0.195274)
	mcp (0.170648)
	fat (0.147427)
	lin (0.145603)
	pty (0.142714)
	ssp (0.13552)
	pla (0.133672)
	thg (0.126791)
	bla (0.124347)
	cty (0.10408)