Ss1.1-Pig4-TMW8035O06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAGCAGCTGGAGGGTGGAGGAGGCGGCGCGGCCCGTCTAGTCCTCGCCATGAGGCCGC AGCAGGCGCCGGTGTCCGGGAAGGTCTTCATTCAGCGAGACTACAGCAGTGGCACTCGCT GCCAGTTCCAGACCAAGTTCCCCGCGGAGCTGGAGAACCGGATTGATAGGCAGCAATTTG AAGAGACAGTTCGAACGCTAAATAACCTTTATGCCGAAGCAGAGAAGCTCGGGGGCCAGT CCTACCTAGAAGGCTGCCTGGCATGTTTAACAGCATACACCATCTTCTTGTGCATGGAGA CTCATTATGAGAAGGTTCTGAAGAAGGTCTCCAAATACATTCAAGAGCAGAACGAGAAGA TCTATGCTCCCCAAGGCCTCCTCCTGACAGATCCCATCGAGAGAGGACTCCGAGTTATTG AAATTACCATTTATGAAGACAGAGGCGTGAGCAGTGGGAGATAAACCATGGAATTAAAGA TCCCACCTCCAGCTGGGACCCTCATCTGTCCCCTGGCCGACCGCAGCGTGTCCCCTACCT CCTCTCAGAGCATCATTCCTTCGTATCTGCTGCCAGAGCCACGGTGCCATTCACTCCAAG GACTCACTTTCTGAAATTCCACACCTGGGGTGACCTCTAGTCGCTCAGCATCCACTTTGT GTCTCCAAATTGTGTAGAACTCTGTAATCATCTGACTAGTTCCTGAGAAACACAATGAAA CATTTCACTTTTTTTTTTTTTTAAATTCGAAGCCATTAATAAAATATGCAGTTGGTCAGC CCAACACAGTTTATTTCTTATCTGCCACCATTCCTCGGGCCAGCTTCCACAAGCCGTATC CTAGCCAGTGTTCAGTCTTACTCCCCCAAATTCATACAACGCTTTTCTCCAGGATTTTGG TGAAGGGTGGGCTGTGTCTGTGGTTTTGCTAAGGCATCTCCCAGATTTCCAAGAACTACC AGTTTTGCCATGACTCAAATCTTAAAAGATCTAGTTCTGCTGTTTAACTTTCTCAAACTG AAGCTCATTGGGAAGATAATGTGTAATGTTATTTGTTTTATTACAGCAGTTCCTAATTAA AGCAGTATTTAATGCAATTTCCAGGTTTGGTTTTTGAGAATTTTGTTATTACTGCACTAC CTTGAATGTTGAGCTGTGGGATGTGTTGCTTGTTCCTTATAAAAATAAGTAAGCACAATA AAGTGGATGCCAAACCATCAAACATAAATGCCCCTGCTGTGTCCCTGACTGTGTAATGAG CAAGTGTAATAAATATTTTACTTCTAGTTTTGTTATAAATATAACTTAAGAGAAAAAAAT TTGATAGGAATGATACTGTATATTGCTAATTTTTAACTATCCCTACTGGCAAACCTTCTG ATTCATAGACTTTCCTCCATATACAGTATTCAGTGCACAGAAATGTTATGATCGATTCAA GTTCAGTAAGTTAAGTGATTTCCAACTGAAACTCTCAAGTCTGCATCAATATCTCTAGCT CTTCTCTTGGCTGTGTGTTCTCAGTATTGGGACTTTTATGCCCTTCATCTTTGAGGTTTG AGAGCACTGGATTTGGGAGAAAGATAAATATATTAGATGAGGATGAAACAGTTACAAGTT TTACTCTCAGAGATATTGTAGGTGCTAATACTGGACTCACTCTTTCAGATTTAATTTCTT TTATGGGTCTGTTAGTTATTCAGTAAATCCCATAGGTCTGTGTAATATTTTAATTGTATA AAACTTGTTACTTTATAGCCTATAATAGTGTGTCTGTCTGCCTTTGAAACCCGTTGCAAT AACTTTGCTGAAATACTAACACGTTAGTAAAACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAGCAGCTGGAGGGTGGAGGAGGCGGCGCGGCCCGTCTAGTCCTCGCCATGAGGCCGC AGCAGGCGCCGGTGTCCGGGAAGGTCTTCATTCAGCGAGACTACAGCAGTGGCACTCGCT GCCAGTTCCAGACCAAGTTCCCCGCGGAGCTGGAGAACCGGATTGATAGGCAGCAATTTG AAGAGACAGTTCGAACGCTAAATAACCTTTATGCCGAAGCAGAGAAGCTCGGGGGCCAGT CCTACCTAGAAGGCTGCCTGGCATGTTTAACAGCATACACCATCTTCTTGTGCATGGAGA CTCATTATGAGAAGGTTCTGAAGAAGGTCTCCAAATACATTCAAGAGCAGAACGAGAAGA TCTATGCTCCCCAAGGCCTCCTCCTGACAGATCCCATCGAGAGAGGACTCCGAGTTATTG AAATTACCATTTATGAAGACAGAGGCGTGAGCAGTGGGAGATAAACCATGGAATTAAAGA TCCCACCTCCAGCTGGGACCCTCATCTGTCCCCTGGCCGACCGCAGCGTGTCCCCTACCT CCTCTCAGAGCATCATTCCTTCGTATCTGCTGCCAGAGCCACGGTGCCATTCACTCCAAG GACTCACTTTCTGAAATTCCACACCTGGGGTGACCTCTAGTCGCTCAGCATCCACTTTGT GTCTCCAAATTGTGTAGAACTCTGTAATCATCTGACTAGTTCCTGAGAAACACAATGAAA CATTTCACTTTTTTTTTTTTTTAAATTCGAAGCCATTAATAAAATATGCAGTTGGTCAGC CCAACACAGTTTATTTCTTATCTGCCACCATTCCTCGGGCCAGCTTCCACAAGCCGTATC CTAGCCAGTGTTCAGTCTTACTCCCCCAAATTCATACAACGCTTTTCTCCAGGATTTTGG TGAAGGGTGGGCTGTGTCTGTGGTTTTGCTAAGGCATCTCCCAGATTTCCAAGAACTACC AGTTTTGCCATGACTCAAATCTTAAAAGATCTAGTTCTGCTGTTTAACTTTCTCAAACTG AAGCTCATTGGGAAGATAATGTGTAATGTTATTTGTTTTATTACAGCAGTTCCTAATTAA AGCAGTATTTAATGCAATTTCCAGGTTTGGTTTTTGAGAATTTTGTTATTACTGCACTAC CTTGAATGTTGAGCTGTGGGATGTGTTGCTTGTTCCTTATAAAAATAAGTAAGCACAATA AAGTGGATGCCAAACCATCAAACATAAATGCCCCTGCTGTGTCCCTGACTGTGTAATGAG CAAGTGTAATAAATATTTTACTTCTAGTTTTGTTATAAATATAACTTAAGAGAAAAAAAT TTGATAGGAATGATACTGTATATTGCTAATTTTTAACTATCCCTACTGGCAAACCTTCTG ATTCATAGACTTTCCTCCATATACAGTATTCAGTGCACAGAAATGTTATGATCGATTCAA GTTCAGTAAGTTAAGTGATTTCCAACTGAAACTCTCAAGTCTGCATCAATATCTCTAGCT CTTCTCTTGGCTGTGTGTTCTCAGTATTGGGACTTTTATGCCCTTCATCTTTGAGGTTTG AGAGCACTGGATTTGGGAGAAAGATAAATATATTAGATGAGGATGAAACAGTTACAAGTT TTACTCTCAGAGATATTGTAGGTGCTAATACTGGACTCACTCTTTCAGATTTAATTTCTT TTATGGGTCTGTTAGTTATTCAGTAAATCCCATAGGTCTGTGTAATATTTTAATTGTATA AAACTTGTTACTTTATAGCCTATAATAGTGTGTCTGTCTGCCTTTGAAACCCGTTGCAAT AACTTTGCTGAAATACTAACACGTTAGTAAAACTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 197-316, + strand, RNAz p=0.976985 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 197-316, + strand, RNAz p=0.976985 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 158-316, gnl|bosTau2|chr26 (10275171-10275013) | |
| 158-316, gnl|canFam2|chr28 (14074614-14074782) | |
| 158-316, gnl|danRer3|chr1 (54994131-54994289) | |
| 158-316, gnl|dasNov1|scaffold_9389 (58994-59153) | |
| 158-316, gnl|echTel1|scaffold_23604 (794-947) | |
| 158-316, gnl|fr1|chrUn (164780562-164780719) | |
| 158-316, gnl|galGal2|chr6 (21430323-21430165) | |
| 158-316, gnl|hg17|chr10 (99613674-99613840) | |
| 158-316, gnl|Hg17|chr10 (99613673-99613831) | |
| 158-316, gnl|loxAfr1|scaffold_18567 (23752-23583) | |
| 158-316, gnl|mm7|chr19 (42160621-42160780) | |
| 158-316, gnl|Mm7|chr19 (42160620-42160778) | |
| 158-316, gnl|monDom2|scaffold_14 (24570063-24569895) | |
| 158-316, gnl|oryCun1|scaffold_189927 (13687-13517) | |
| 158-316, gnl|panTro1|chr8 (101349465-101349631) | |
| 158-316, gnl|rheMac2|chr9 (97459385-97459551) | |
| 158-316, gnl|rn3|chr1 (248846072-248845913) | |
| 158-316, gnl|tetNig1|chr18 (1936211-1936054) | |
| 158-316, gnl|xenTro1|scaffold_51 (1697823-1697982) | |
| 478-1836, gnl|bosTau2|chr27 (22189763-22188388) | |
| 478-1836, gnl|Hg17|chr8 (41486258-41487646) | |
| 478-1836, gnl|Mm7|chr8 (22027950-22026674) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-316, gnl|bosTau2|chr26 (10275171-10275013) | |
| 158-316, gnl|canFam2|chr28 (14074614-14074782) | |
| 158-316, gnl|danRer3|chr1 (54994131-54994289) | |
| 158-316, gnl|dasNov1|scaffold_9389 (58994-59153) | |
| 158-316, gnl|echTel1|scaffold_23604 (794-947) | |
| 158-316, gnl|fr1|chrUn (164780562-164780719) | |
| 158-316, gnl|galGal2|chr6 (21430323-21430165) | |
| 158-316, gnl|hg17|chr10 (99613674-99613840) | |
| 158-316, gnl|Hg17|chr10 (99613673-99613831) | |
| 158-316, gnl|loxAfr1|scaffold_18567 (23752-23583) | |
| 158-316, gnl|mm7|chr19 (42160621-42160780) | |
| 158-316, gnl|Mm7|chr19 (42160620-42160778) | |
| 158-316, gnl|monDom2|scaffold_14 (24570063-24569895) | |
| 158-316, gnl|oryCun1|scaffold_189927 (13687-13517) | |
| 158-316, gnl|panTro1|chr8 (101349465-101349631) | |
| 158-316, gnl|rheMac2|chr9 (97459385-97459551) | |
| 158-316, gnl|rn3|chr1 (248846072-248845913) | |
| 158-316, gnl|tetNig1|chr18 (1936211-1936054) | |
| 158-316, gnl|xenTro1|scaffold_51 (1697823-1697982) | |
| 478-1836, gnl|bosTau2|chr27 (22189763-22188388) | |
| 478-1836, gnl|Hg17|chr8 (41486258-41487646) | |
| 478-1836, gnl|Mm7|chr8 (22027950-22026674) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| cbe (0.717703) | |
| fbs (0.701385) | |
| lin (0.582411) | |
| tra (0.492368) | |
| mga (0.480615) | |
| clu (0.478583) | |
| ski (0.440205) | |
| lyg (0.399308) | |
| fcc (0.39557) | |
| ova (0.387397) | |
| ret (0.3862) | |
| duo (0.345602) | |
| spc (0.340097) | |
| cki (0.330469) | |
| csp (0.322373) | |
| cag (0.302389) | |
| cte (0.29274) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| ssp (0.271039) | |
| sug (0.254582) | |
| bla (0.248694) | |
| ece (0.229305) | |
| jca (0.22792) | |
| eje (0.197668) | |
| col (0.195008) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.717703) | |
| fbs (0.701385) | |
| lin (0.582411) | |
| tra (0.492368) | |
| mga (0.480615) | |
| clu (0.478583) | |
| ski (0.440205) | |
| lyg (0.399308) | |
| fcc (0.39557) | |
| ova (0.387397) | |
| ret (0.3862) | |
| duo (0.345602) | |
| spc (0.340097) | |
| cki (0.330469) | |
| csp (0.322373) | |
| cag (0.302389) | |
| cte (0.29274) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| ssp (0.271039) | |
| sug (0.254582) | |
| bla (0.248694) | |
| ece (0.229305) | |
| jca (0.22792) | |
| eje (0.197668) | |
| col (0.195008) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |