Non-Coding RNA Search

Ss1.1-Pig4-TMW8035O08.3

Sequence:


               
               GAAAGCTAGAAGAAAACAGTTCCCCAAAAAAGTCCCATTACTGTTTGCTCCTCCTATCAA
ATTCTCAGTCCCTACTTTTGGCCTTGTTACCACTTTTTGTTTTTTTGCTTTGTGTGGGTT
ATATTTAAAAATATGTATCTCTGTATAACAGGCATTATGATCACGTCATCAGGCTGTTTA
CCTCTTAACGTGATAGATCTAGGAATTTGGCCTAATTATGCTAGTAGACAGACATTGGAA
GTAAAACTATAAAATCATCTACCTAAATAGTGTTAATTACCATATGATAAAAATTGTTTT
GGTATAGTACCAGCTAGTTGCTTTCTAAACAGATATTTTTATTTAATCTAAAAGTGACTG
TACTTAGTGGAAACTTGGCCTTTTAGAAGTCCCCATTGTAATTTTTTCATAGAAGTCCTT
ACATTTTGCCATGTGTCACCAAGCAAATGTTTGTATAGTCATTTAAATATAGATTGAAAC
ATTGCATTAGGAAATGCCCAAAATGGCCTGATATCTTCCACGTGGCCTATATTACTGACA
TTCCCAAATCCCAAACACATAGGTTTTTTTTTTTCAAAAGCATTACATTTTCCTTTGTAG
TTTCATCTCCTTATAAGACTGGCAGGCTGGAGAAGCCTGTGAAGCCACTGTTAGTGTCAG
TTAGAAACTCTGAGACTTTATTAATGTAAATTCTCAATTTGGCTGCTGAACACGTGCCAA
AGTTTTACTACTGTAGTGACCGTTGAGAAGACCCTTGTTTATTTACATTTGAAGCACTGT
TTGTGCAAACAACCTTTCATTGTTAAGTGCCTGTATTCCTTTCATTTACTTCATGTCCAG
GGGTGCTATTTACCTAGAACCATTGTCTACTACAATTAACATTTACATTACAAAGTGTGT
GGTTTTCTTTCTCAAGGAGGTTCAATTAAGGCAATAAGATGTTTGCTGGGGAAACCTATT
GTTTACTGAAAGCACTCAATGGAGTCAAATTACTGAAGCTTTTTGCCTACATCTTGGTCT
TTTATGTAAATGTGTTAAATATAACATCTAAGGAAAATAAACAATATTATAATTATGTGT
TTGCCATTGTCATATCAAACTTGCTTTGTATCATACTAATGTTACATAACTTATCGATCA
ATAAAAATACATTTCAATGTTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGCTAGAAGAAAACAGTTCCCCAAAAAAGTCCCATTACTGTTTGCTCCTCCTATCAA
ATTCTCAGTCCCTACTTTTGGCCTTGTTACCACTTTTTGTTTTTTTGCTTTGTGTGGGTT
ATATTTAAAAATATGTATCTCTGTATAACAGGCATTATGATCACGTCATCAGGCTGTTTA
CCTCTTAACGTGATAGATCTAGGAATTTGGCCTAATTATGCTAGTAGACAGACATTGGAA
GTAAAACTATAAAATCATCTACCTAAATAGTGTTAATTACCATATGATAAAAATTGTTTT
GGTATAGTACCAGCTAGTTGCTTTCTAAACAGATATTTTTATTTAATCTAAAAGTGACTG
TACTTAGTGGAAACTTGGCCTTTTAGAAGTCCCCATTGTAATTTTTTCATAGAAGTCCTT
ACATTTTGCCATGTGTCACCAAGCAAATGTTTGTATAGTCATTTAAATATAGATTGAAAC
ATTGCATTAGGAAATGCCCAAAATGGCCTGATATCTTCCACGTGGCCTATATTACTGACA
TTCCCAAATCCCAAACACATAGGTTTTTTTTTTTCAAAAGCATTACATTTTCCTTTGTAG
TTTCATCTCCTTATAAGACTGGCAGGCTGGAGAAGCCTGTGAAGCCACTGTTAGTGTCAG
TTAGAAACTCTGAGACTTTATTAATGTAAATTCTCAATTTGGCTGCTGAACACGTGCCAA
AGTTTTACTACTGTAGTGACCGTTGAGAAGACCCTTGTTTATTTACATTTGAAGCACTGT
TTGTGCAAACAACCTTTCATTGTTAAGTGCCTGTATTCCTTTCATTTACTTCATGTCCAG
GGGTGCTATTTACCTAGAACCATTGTCTACTACAATTAACATTTACATTACAAAGTGTGT
GGTTTTCTTTCTCAAGGAGGTTCAATTAAGGCAATAAGATGTTTGCTGGGGAAACCTATT
GTTTACTGAAAGCACTCAATGGAGTCAAATTACTGAAGCTTTTTGCCTACATCTTGGTCT
TTTATGTAAATGTGTTAAATATAACATCTAAGGAAAATAAACAATATTATAATTATGTGT
TTGCCATTGTCATATCAAACTTGCTTTGTATCATACTAATGTTACATAACTTATCGATCA
ATAAAAATACATTTCAATGTTAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1162, gnl|bosTau2|chr7 (56648726-56649892)
               

               
               1-1162, gnl|Hg17|chr5 (87997184-87996019)
               

               
               1-1162, gnl|Mm7|chr13 (80810352-80811542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1162, gnl|bosTau2|chr7 (56648726-56649892)
               

               
               1-1162, gnl|Hg17|chr5 (87997184-87996019)
               

               
               1-1162, gnl|Mm7|chr13 (80810352-80811542)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	1-1162, gnl\|bosTau2\|chr7 (56648726-56649892)
	1-1162, gnl\|Hg17\|chr5 (87997184-87996019)
	1-1162, gnl\|Mm7\|chr13 (80810352-80811542)

	fce (0.271592)
	ecc (0.23007)
	ece (0.229305)
	eye (0.170503)
	fco (0.157208)
	hyp (0.142837)
	ebs (0.118301)