Non-Coding RNA Search

Ss1.1-Pig4-TMW8035O16.3

Sequence:


               
               GTAGACCATTGAGAGATGAATGCACACCTGTAATAGCCTAGGACCAGTTTTGGTGGCTAA
AGGGAATATTTTAACTAAGCAAGAAGTTCTGTTCTAAAAGTAGTATATATTGTTCGCAGT
TTTTTCAGTTATTCCCACAAGTCAGGGTCCAGATAAAATGAGGGTTATCAGCTAATTGCT
ATGTTATCATTGGAGGTTCATCAATGAATTTGTACATTTCTAGTTCCCTTTGGTGAAGGG
AAAAAGTGATGATTTTGCAAGACCTAGATTTTTGGCTTGGTTTCTTGCCTCCTTTTTGGC
AGCCTTCATCTCATCTCCAAAGCCCTTGAGCCTGTAGGGTTTTCGTGGTGGACGAAGGAC
CTGTGGTCTTTTAAAACTAGGACTGATTTTTTTTTTTTTTTTTTTGCAAGAGATTATCAT
GTTCAAAGTGATATTCTGCCACTTTACTGAAGACTAATTTTAAATTTAGACAGTCCTCTC
AATTTTCGGACCAAACAGATACCCACAGTGGAGGCTTATCAAGGGTTGCAATGGGGAAGA
AGCCTCTCTCCCTCACTGTCAGTACCAGCTGGTAAAGGTGACTGTACAGATGTGCATTTT
CCTTTTGGTAGAAGTGGTCCGCAGCACTAACTGGTAAGGCTTATTGTACAGTATATTGTC
AGTATTCTTCTGGTTCAACATACCTTATAGTTCATATATAACCTGTATTAATTGTATAGA
TTGTGCATTTAAAGCTGTTACCAAGTTGTCAGAACATAAGAGCGAAAACAAGGTCATATG
TAATATTTTGTTTGTAAGTATCCTTTGTATCATAGCAAAGGAAATGTTTAAAAAATCAAC
TGTAATAAAGTAATTTTAGTACACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGACCATTGAGAGATGAATGCACACCTGTAATAGCCTAGGACCAGTTTTGGTGGCTAA
AGGGAATATTTTAACTAAGCAAGAAGTTCTGTTCTAAAAGTAGTATATATTGTTCGCAGT
TTTTTCAGTTATTCCCACAAGTCAGGGTCCAGATAAAATGAGGGTTATCAGCTAATTGCT
ATGTTATCATTGGAGGTTCATCAATGAATTTGTACATTTCTAGTTCCCTTTGGTGAAGGG
AAAAAGTGATGATTTTGCAAGACCTAGATTTTTGGCTTGGTTTCTTGCCTCCTTTTTGGC
AGCCTTCATCTCATCTCCAAAGCCCTTGAGCCTGTAGGGTTTTCGTGGTGGACGAAGGAC
CTGTGGTCTTTTAAAACTAGGACTGATTTTTTTTTTTTTTTTTTTGCAAGAGATTATCAT
GTTCAAAGTGATATTCTGCCACTTTACTGAAGACTAATTTTAAATTTAGACAGTCCTCTC
AATTTTCGGACCAAACAGATACCCACAGTGGAGGCTTATCAAGGGTTGCAATGGGGAAGA
AGCCTCTCTCCCTCACTGTCAGTACCAGCTGGTAAAGGTGACTGTACAGATGTGCATTTT
CCTTTTGGTAGAAGTGGTCCGCAGCACTAACTGGTAAGGCTTATTGTACAGTATATTGTC
AGTATTCTTCTGGTTCAACATACCTTATAGTTCATATATAACCTGTATTAATTGTATAGA
TTGTGCATTTAAAGCTGTTACCAAGTTGTCAGAACATAAGAGCGAAAACAAGGTCATATG
TAATATTTTGTTTGTAAGTATCCTTTGTATCATAGCAAAGGAAATGTTTAAAAAATCAAC
TGTAATAAAGTAATTTTAGTACACAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               156-311, - strand, RNAz p=0.846604
               

               
               466-585, - strand, RNAz p=0.73413
               

               
               626-745, + strand, RNAz p=0.841098

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-311, - strand, RNAz p=0.846604
               

               
               466-585, - strand, RNAz p=0.73413
               

               
               626-745, + strand, RNAz p=0.841098

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               492-610, - strand, RNAmicro p=0.995062

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               492-610, - strand, RNAmicro p=0.995062

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-864, gnl|bosTau2|chr19 (14082762-14081904)
               

               
               1-864, gnl|Hg17|chr17 (24902190-24903046)
               

               
               1-864, gnl|Mm7|chr11 (77611591-77610739)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr19 (14082762-14081904)
               

               
               1-864, gnl|Hg17|chr17 (24902190-24903046)
               

               
               1-864, gnl|Mm7|chr11 (77611591-77610739)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               bla (0.248694)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)

	156-311, - strand, RNAz p=0.846604
	466-585, - strand, RNAz p=0.73413
	626-745, + strand, RNAz p=0.841098

	1-864, gnl\|bosTau2\|chr19 (14082762-14081904)
	1-864, gnl\|Hg17\|chr17 (24902190-24903046)
	1-864, gnl\|Mm7\|chr11 (77611591-77610739)

	bla (0.248694)
	fcc (0.197785)
	aor (0.195274)
	gul (0.177588)
	fbs (0.175346)
	lun (0.150489)
	ski (0.146735)
	lyg (0.133103)