Non-Coding RNA Search

Ss1.1-Pig4-TMW8035O22.3

Sequence:


               
               ACTTGGGGTCAACCCTCCTCTCTGTGTATGGCCATTGGGAGATTGGGGCTCACCCTTTTA
GGCTTTAGGAGGCTTGAGAATGGAAAGATCCTGAATCCTGCCTTTCCCTGCTTTCCTGCC
GTGGTTTCAGGGTTGGGAAACCCCTTTTAGCTCTTTGCCCCAGGTCTCCTACCTCTCCTT
AAGTCTTGTGGGGGTTCCCAGGATGGCTCTTTTAACCACAGACTGGCCCATCTTTAAAAC
TTGACTGAACTGTGGCTTCAGGAAGAGGTCTGCCACTGCAGGCCATCTCTCCTAGTACTG
TGTGTAACAGAAAACACAGTCTTACCTTTAGCTGCTTGATTCTTTAAGCCATCCCACTCC
ACACCAGCTCCCTTCCTCATGGAAGAGCACAGGGAGAGACCTCCTGGGTTTGACTGTATA
CCTTATCCACCTCTTTTGGGATTGAAGGAATGATTAAGGTGGCTGGGGCTCAGACACCTG
TCGTATCACTGGTCACTGAATATGAAAGTCCCAGTTGAATTCTTGCCCTTAAATGCTTTT
GCTGCTATTTCTTTGCCCCCCACCAGGAATTCTGCATCCTGGGACGGTCAGATTCTACTA
GAACAGGACAGGAAGGAAGGGAAGAGTGAAAGGATGGAATTCCCAGATACTCCTTCCTCC
TGCCCCTTTTTCCTAGCAGCACTCAGACCAAATGTTAGCTGCTGCACTTCCTCCCTGAAG
TGGGGAATGTGTGGTGACTGAGTGGTTTGTGTTCTTCTTGCTGGTGGGGTGATGGAGTGG
GCTGAAAACCGTGCACTCTGGAATTTGTTGTGTATTTTCTCTCAGTAAAGCTTTTTTTTT
TTTTTCTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGGGGTCAACCCTCCTCTCTGTGTATGGCCATTGGGAGATTGGGGCTCACCCTTTTA
GGCTTTAGGAGGCTTGAGAATGGAAAGATCCTGAATCCTGCCTTTCCCTGCTTTCCTGCC
GTGGTTTCAGGGTTGGGAAACCCCTTTTAGCTCTTTGCCCCAGGTCTCCTACCTCTCCTT
AAGTCTTGTGGGGGTTCCCAGGATGGCTCTTTTAACCACAGACTGGCCCATCTTTAAAAC
TTGACTGAACTGTGGCTTCAGGAAGAGGTCTGCCACTGCAGGCCATCTCTCCTAGTACTG
TGTGTAACAGAAAACACAGTCTTACCTTTAGCTGCTTGATTCTTTAAGCCATCCCACTCC
ACACCAGCTCCCTTCCTCATGGAAGAGCACAGGGAGAGACCTCCTGGGTTTGACTGTATA
CCTTATCCACCTCTTTTGGGATTGAAGGAATGATTAAGGTGGCTGGGGCTCAGACACCTG
TCGTATCACTGGTCACTGAATATGAAAGTCCCAGTTGAATTCTTGCCCTTAAATGCTTTT
GCTGCTATTTCTTTGCCCCCCACCAGGAATTCTGCATCCTGGGACGGTCAGATTCTACTA
GAACAGGACAGGAAGGAAGGGAAGAGTGAAAGGATGGAATTCCCAGATACTCCTTCCTCC
TGCCCCTTTTTCCTAGCAGCACTCAGACCAAATGTTAGCTGCTGCACTTCCTCCCTGAAG
TGGGGAATGTGTGGTGACTGAGTGGTTTGTGTTCTTCTTGCTGGTGGGGTGATGGAGTGG
GCTGAAAACCGTGCACTCTGGAATTTGTTGTGTATTTTCTCTCAGTAAAGCTTTTTTTTT
TTTTTCTGAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               292-452, - strand, RNAz p=0.997012
               

               
               317-418, - strand, RNAz p=0.647519
               

               
               492-714, + strand, RNAz p=0.992569
               

               
               625-756, - strand, RNAz p=0.99205

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               292-452, - strand, RNAz p=0.997012
               

               
               317-418, - strand, RNAz p=0.647519
               

               
               492-714, + strand, RNAz p=0.992569
               

               
               625-756, - strand, RNAz p=0.99205

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               742-871, + strand, RNAmicro p=0.995705

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               742-871, + strand, RNAmicro p=0.995705

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of NM_015726, -
               

               
               5' of NM_015726, +
               

               
               5' of NM_015726, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015726, -
               

               
               5' of NM_015726, +
               

               
               5' of NM_015726, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-846, gnl|bosTau2|chr3 (4823941-4824809)
               

               
               1-846, gnl|canFam2|chr38 (25001098-24999635)
               

               
               1-846, gnl|dasNov1|scaffold_499 (37102-38615)
               

               
               1-846, gnl|echTel1|scaffold_319549 (58017-59407)
               

               
               1-846, gnl|hg17|chr1 (156998405-156999967)
               

               
               1-846, gnl|Hg17|chr1 (156999497-156998587)
               

               
               1-846, gnl|loxAfr1|scaffold_56451 (10091-8565)
               

               
               1-846, gnl|mm7|chr1 (172166725-172165289)
               

               
               1-846, gnl|Mm7|chr1 (172165758-172166556)
               

               
               1-846, gnl|monDom2|scaffold_13 (61312082-61310493)
               

               
               1-846, gnl|oryCun1|scaffold_198225 (42333-43859)
               

               
               1-846, gnl|panTro1|chr1 (139076563-139078125)
               

               
               1-846, gnl|rheMac2|chr1 (138837737-138839282)
               

               
               1-846, gnl|rn3|chr13 (88376379-88374981)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-846, gnl|bosTau2|chr3 (4823941-4824809)
               

               
               1-846, gnl|canFam2|chr38 (25001098-24999635)
               

               
               1-846, gnl|dasNov1|scaffold_499 (37102-38615)
               

               
               1-846, gnl|echTel1|scaffold_319549 (58017-59407)
               

               
               1-846, gnl|hg17|chr1 (156998405-156999967)
               

               
               1-846, gnl|Hg17|chr1 (156999497-156998587)
               

               
               1-846, gnl|loxAfr1|scaffold_56451 (10091-8565)
               

               
               1-846, gnl|mm7|chr1 (172166725-172165289)
               

               
               1-846, gnl|Mm7|chr1 (172165758-172166556)
               

               
               1-846, gnl|monDom2|scaffold_13 (61312082-61310493)
               

               
               1-846, gnl|oryCun1|scaffold_198225 (42333-43859)
               

               
               1-846, gnl|panTro1|chr1 (139076563-139078125)
               

               
               1-846, gnl|rheMac2|chr1 (138837737-138839282)
               

               
               1-846, gnl|rn3|chr13 (88376379-88374981)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               sug (0.254582)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	292-452, - strand, RNAz p=0.997012
	317-418, - strand, RNAz p=0.647519
	492-714, + strand, RNAz p=0.992569
	625-756, - strand, RNAz p=0.99205

	1-846, gnl\|bosTau2\|chr3 (4823941-4824809)
	1-846, gnl\|canFam2\|chr38 (25001098-24999635)
	1-846, gnl\|dasNov1\|scaffold_499 (37102-38615)
	1-846, gnl\|echTel1\|scaffold_319549 (58017-59407)
	1-846, gnl\|hg17\|chr1 (156998405-156999967)
	1-846, gnl\|Hg17\|chr1 (156999497-156998587)
	1-846, gnl\|loxAfr1\|scaffold_56451 (10091-8565)
	1-846, gnl\|mm7\|chr1 (172166725-172165289)
	1-846, gnl\|Mm7\|chr1 (172165758-172166556)
	1-846, gnl\|monDom2\|scaffold_13 (61312082-61310493)
	1-846, gnl\|oryCun1\|scaffold_198225 (42333-43859)
	1-846, gnl\|panTro1\|chr1 (139076563-139078125)
	1-846, gnl\|rheMac2\|chr1 (138837737-138839282)
	1-846, gnl\|rn3\|chr13 (88376379-88374981)

	sug (0.254582)
	nlu (0.191681)
	nco (0.161734)
	cli (0.152812)
	fat (0.147427)
	cst (0.140036)
	ssp (0.13552)
	thg (0.126791)
	pgl (0.118483)
	med (0.116252)
	eje (0.0988338)