Ss1.1-Pig4-TMW8035P07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCGGCAAGAGCGAGCCCGAGTGGGGGATCGCGGATCGGGCGGGGGTGGGGAGCGGGGG GCGGGCGGCATGGCCAGTGTTACAGACGAGCTTTAACTCCGGTCCCAGGCGTGGAGACGG CGACTCGGCGGCCCAGTGGCACCTCAGTTCTTAACAAATGACAATATTGAGTCGACAGGT TAAAATAAATCAGAGAAAAGGCCTGCTTGCCTGCTTGCACTTTTTATTTAAGACACCCCC ACCCCCACGCTAGGGTGATCTTTTTAAGAAAAAGAAAAAGAGGATTTTTACAGCGCTCCT TTGTTCTTTTGTATGTAGCAGATATCCATTTGACAGTGTTTTCCCGCGGTCTTAGCCTCT GCGGAAACTTCCATGAGGAGGAGGGCTCCCTTTTTGGGGCCAACCCCTTACCTGTTAGTA TGTAAGCCAGGCAGGCCGAAGGGGGGAGGGGGGAGGGGTGTCCAGAACTTTCTAACTTTT TTTTTTAATTATTAATCCCCTTCTGCTGTGTTTTCTGTTGTCAGTTTTTAAATTTTTTAA TTGGTTTTTTTTTTCAAACTTTTACTTTTTACCTCTTGTGTATATGTAGGGAATTTATAG GGAAATATGTACTTTATGGAATAAATTTTAAGAACTAAAATATATTTTATTTTAAATAAA GTAACGGACCTTTAATCTTACACAGCTAAATTACTGATTATATATTTGCTGAGCTGACCT AAGAGTTCAGAAAATTGTATCGAGAGTTTTATTTTTTGACTTCAAAAGCCTTCTTAATAA AGTCTTTTTACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCGGCAAGAGCGAGCCCGAGTGGGGGATCGCGGATCGGGCGGGGGTGGGGAGCGGGGG GCGGGCGGCATGGCCAGTGTTACAGACGAGCTTTAACTCCGGTCCCAGGCGTGGAGACGG CGACTCGGCGGCCCAGTGGCACCTCAGTTCTTAACAAATGACAATATTGAGTCGACAGGT TAAAATAAATCAGAGAAAAGGCCTGCTTGCCTGCTTGCACTTTTTATTTAAGACACCCCC ACCCCCACGCTAGGGTGATCTTTTTAAGAAAAAGAAAAAGAGGATTTTTACAGCGCTCCT TTGTTCTTTTGTATGTAGCAGATATCCATTTGACAGTGTTTTCCCGCGGTCTTAGCCTCT GCGGAAACTTCCATGAGGAGGAGGGCTCCCTTTTTGGGGCCAACCCCTTACCTGTTAGTA TGTAAGCCAGGCAGGCCGAAGGGGGGAGGGGGGAGGGGTGTCCAGAACTTTCTAACTTTT TTTTTTAATTATTAATCCCCTTCTGCTGTGTTTTCTGTTGTCAGTTTTTAAATTTTTTAA TTGGTTTTTTTTTTCAAACTTTTACTTTTTACCTCTTGTGTATATGTAGGGAATTTATAG GGAAATATGTACTTTATGGAATAAATTTTAAGAACTAAAATATATTTTATTTTAAATAAA GTAACGGACCTTTAATCTTACACAGCTAAATTACTGATTATATATTTGCTGAGCTGACCT AAGAGTTCAGAAAATTGTATCGAGAGTTTTATTTTTTGACTTCAAAAGCCTTCTTAATAA AGTCTTTTTACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 46-246, gnl|bosTau2|chr7 (28940816-28941017) | |
| 46-246, gnl|canFam2|chr20 (60463488-60463774) | |
| 46-246, gnl|echTel1|scaffold_244341 (1351-1032) | |
| 46-246, gnl|hg17|chr1 (185954531-185954813) | |
| 46-246, gnl|Hg17|chr19 (1506490-1506255) | |
| 46-246, gnl|Mm7|chr10 (80170009-80169812) | |
| 46-246, gnl|panTro1|chr1 (168534228-168534508) | |
| 46-246, gnl|rheMac2|chr1 (181478692-181478393) | |
| 610-795, gnl|bosTau2|chr7 (28941225-28941408) | |
| 610-795, gnl|canFam2|chr20 (60464244-60464110) | |
| 610-795, gnl|echTel1|scaffold_244341 (530-664) | |
| 610-795, gnl|galGal2|chr28 (1356230-1356095) | |
| 610-795, gnl|hg17|chr1 (185954218-185954360) | |
| 610-795, gnl|Hg17|chr19 (1505860-1505676) | |
| 610-795, gnl|mm7|chr10 (80169230-80169365) | |
| 610-795, gnl|Mm7|chr10 (80169419-80169234) | |
| 610-795, gnl|monDom2|scaffold_75 (2100568-2100705) | |
| 610-795, gnl|oryCun1|scaffold_130258 (12588-12449) | |
| 610-795, gnl|panTro1|chr1 (168533919-168534061) | |
| 610-795, gnl|rheMac2|chr1 (181479028-181478881) | |
| 610-795, gnl|rn3|chr7 (10844165-10844029) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-246, gnl|bosTau2|chr7 (28940816-28941017) | |
| 46-246, gnl|canFam2|chr20 (60463488-60463774) | |
| 46-246, gnl|echTel1|scaffold_244341 (1351-1032) | |
| 46-246, gnl|hg17|chr1 (185954531-185954813) | |
| 46-246, gnl|Hg17|chr19 (1506490-1506255) | |
| 46-246, gnl|Mm7|chr10 (80170009-80169812) | |
| 46-246, gnl|panTro1|chr1 (168534228-168534508) | |
| 46-246, gnl|rheMac2|chr1 (181478692-181478393) | |
| 610-795, gnl|bosTau2|chr7 (28941225-28941408) | |
| 610-795, gnl|canFam2|chr20 (60464244-60464110) | |
| 610-795, gnl|echTel1|scaffold_244341 (530-664) | |
| 610-795, gnl|galGal2|chr28 (1356230-1356095) | |
| 610-795, gnl|hg17|chr1 (185954218-185954360) | |
| 610-795, gnl|Hg17|chr19 (1505860-1505676) | |
| 610-795, gnl|mm7|chr10 (80169230-80169365) | |
| 610-795, gnl|Mm7|chr10 (80169419-80169234) | |
| 610-795, gnl|monDom2|scaffold_75 (2100568-2100705) | |
| 610-795, gnl|oryCun1|scaffold_130258 (12588-12449) | |
| 610-795, gnl|panTro1|chr1 (168533919-168534061) | |
| 610-795, gnl|rheMac2|chr1 (181479028-181478881) | |
| 610-795, gnl|rn3|chr7 (10844165-10844029) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| ese (0.506009) | |
| ece (0.45861) | |
| eye (0.341006) | |
| csp (0.322373) | |
| ute (0.265569) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.506009) | |
| ece (0.45861) | |
| eye (0.341006) | |
| csp (0.322373) | |
| ute (0.265569) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| nbm (0.0993246) |