Non-Coding RNA Search

Ss1.1-Pig4-TMW8035P08.3

Sequence:


               
               ACCTGCAGTATATGGAGATTCCCAGGCTAGGGGTCTAATCAGAGCTACAGCTGCTGGCCT
ACACCACAGCCACAGCAATGCCAGATCCGAGCTGCGTCTGCGACCTACATACACCACAGC
TCACAGCAACACTGGATCCTTAACCCACTGAGCAAGGCCAGGGGTGGAACCCGCAACCTC
ACGGTTCCTAGTCGGATTCCTTTCCGCTGCACCGTGATGGGAACTCCATATGCTACTTTC
TTCAGCAAATCCCAAGAAGAGACTGAGCAGCCCAGCCCTCCTCGAGCCCCAGAGGCCTTG
AGCCATCAGTGGGCCAGCCAGGGCACACTGTCCAGGGGCAGGGGAGCCAAGCCCACAGTG
CAGAACAGAATGCTGAAACACAACAAAAGGACGAAGATGTCTTTGGCGAAAACTTTGGCA
TTAAATAAAAGAGGCAAACAGGATGGAAACATGCAGCCCTGCCAGCCAGGTTGGGGCAGA
GTGGGGGCACAGGTGACCTTAGAGGCTGGCTCCAAGAAGGGTGGGAACCGGGCCTGGGTA
CGTACCTTGACGGTAGAAAGTTGTGTTTCAACCAGTTGGGTGTGCCTACTGGGCCTGGCA
GGGAGCGCGTGCAAGAAAGGAACAGTGGTGGGCAGGTGGGCCACCTTGGCCACGCAGCCA
GCTTCATCAAGTAACTCAAGTGGATGTAGTGCAAAAGTCGCAATGAAGTAATAAGGACAT
GCTACCTGCTTAACGGTCATGTGGCAATGCTGTGCCAAAGGCAGGTACCTATCCTTGTCC
TGTTTGTTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGCAGTATATGGAGATTCCCAGGCTAGGGGTCTAATCAGAGCTACAGCTGCTGGCCT
ACACCACAGCCACAGCAATGCCAGATCCGAGCTGCGTCTGCGACCTACATACACCACAGC
TCACAGCAACACTGGATCCTTAACCCACTGAGCAAGGCCAGGGGTGGAACCCGCAACCTC
ACGGTTCCTAGTCGGATTCCTTTCCGCTGCACCGTGATGGGAACTCCATATGCTACTTTC
TTCAGCAAATCCCAAGAAGAGACTGAGCAGCCCAGCCCTCCTCGAGCCCCAGAGGCCTTG
AGCCATCAGTGGGCCAGCCAGGGCACACTGTCCAGGGGCAGGGGAGCCAAGCCCACAGTG
CAGAACAGAATGCTGAAACACAACAAAAGGACGAAGATGTCTTTGGCGAAAACTTTGGCA
TTAAATAAAAGAGGCAAACAGGATGGAAACATGCAGCCCTGCCAGCCAGGTTGGGGCAGA
GTGGGGGCACAGGTGACCTTAGAGGCTGGCTCCAAGAAGGGTGGGAACCGGGCCTGGGTA
CGTACCTTGACGGTAGAAAGTTGTGTTTCAACCAGTTGGGTGTGCCTACTGGGCCTGGCA
GGGAGCGCGTGCAAGAAAGGAACAGTGGTGGGCAGGTGGGCCACCTTGGCCACGCAGCCA
GCTTCATCAAGTAACTCAAGTGGATGTAGTGCAAAAGTCGCAATGAAGTAATAAGGACAT
GCTACCTGCTTAACGGTCATGTGGCAATGCTGTGCCAAAGGCAGGTACCTATCCTTGTCC
TGTTTGTTCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55644019|ref|XP_529790.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55644019|ref|XP_529790.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               227-322, - strand, RNAz p=0.652372
               

               
               505-621, + strand, RNAz p=0.996453

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-322, - strand, RNAz p=0.652372
               

               
               505-621, + strand, RNAz p=0.996453

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_025187, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_025187, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               227-782, gnl|bosTau2|chr11 (49536619-49536053)
               

               
               227-782, gnl|Hg17|chr16 (65739458-65738901)
               

               
               227-782, gnl|Mm7|chr10 (55917581-55918179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-782, gnl|bosTau2|chr11 (49536619-49536053)
               

               
               227-782, gnl|Hg17|chr16 (65739458-65738901)
               

               
               227-782, gnl|Mm7|chr10 (55917581-55918179)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	227-322, - strand, RNAz p=0.652372
	505-621, + strand, RNAz p=0.996453

	227-782, gnl\|bosTau2\|chr11 (49536619-49536053)
	227-782, gnl\|Hg17\|chr16 (65739458-65738901)
	227-782, gnl\|Mm7\|chr10 (55917581-55918179)