Non-Coding RNA Search

Ss1.1-Pig4-TMW8035P11.5

Sequence:


               
               TTTGTACTAAACTGCGTCATTTTTAGCTTCTTCAAAATCTGCAGTTAGAAAGTTTCTGGT
AAATAAATATCTGCTTATCATTTCATTTAAATAAAAGGAGGATTACTCCCAAATAATTTA
ATTTCCTAGCTAAAAGTGATATTAGGCTTAACATAGTAATCGTAAAATAAAATTGGCACA
GAAAATAACTTTAAAGTTTCACTCTTGCATAGGGTATTGCTGCTTGTGTGTACATCTGTC
ACTCCACCAAAAGGGACCTAGTCAGTGTTTTTGAGACTTTTCTAATTATCTCAGAGCATG
AGATGGCCAAGTGTGGATGCTAAGGCTTAAGTTTTCCATTAGGATTCAGCAATGTAGGTT
TCAAATTTTATTTCTTGTCATTAGATTGTTTTTGCCATACTTTACACACTTAAAGGGAAA
ATTTATTATTGTTATTATTACATGCATCAATCACTACATAAAAATATCCCAGATAGGTAA
ATGGGAGAAAATAGTGGTTTTAAGACGTGGTGCCAAATGCAGAAAAAGCTATAGAACACT
TGCTTGTTTGTTTACAGTATGTTCCTGGGGATATCCAGGAGTGTCATTCTGGACACTGAG
TGCAGTTCAGCCTTATTTGGTTGTGTTTTGTTTGTCTGTTTTTGAGTACTTGTATTGCCA
AACTCGTACTTTTTAAGTCCTGATTATCCTTGATCATGAAAGGAAAGGAGTCACAGGGAT
AATTAAAATCCACAGCCAGTTTCATCAGTATCCTCACCCATCAGCCCTTCAAACAGAAGA
GCGAAATTTGTTGTTCTGGTTTTATCATTTATTCTAATCATCATTTTTTTTTTGGGGGGA
GTGTTAGAAATAGCAGACAGACAAGCAAGTGTCTAAAAGGCCCCAGTCTGAAAAATTTAC
AAACAATCCTTGAATAAGCCCTATTTACATTTTATTCTTGCCTCCAGGGAAAGAAAACAA
AGCTTTTATCTAGAGGGAAAAACTCCTCAGAACTAAAAATAGCTTTTTTGAGTCAAATAA
AAATCAGTTAAAAGTATTTACCTGATAGCAACATAGCATATTGAAAAGATCTGTTTAAAA
GTTGTTTACAAATGTTTGACTATTTTTGCTGAAGTATTTTAGAGTATTGAATGTCTTTTT
TTCTCCAAGTTTCTTTTATGTTCCTAGTTTCAGCTCCTGCCTGTAGCCGGAGATCACGGG
TCTTCCCTGTGAAACTTTTGTTTCTTTCTGTAAGTGTGTGTGGTTTTCAGTGGTCAAAAC
TCCTCTCTTCAAATGGTAGGAAGTTCTACTTCTGTCATTTAGAACATTTTATGTAAAATG
ATGTAATGCAGAAATCCTTGTGCATACTGTATAATTGAAGGAAGCTTTTTAGATTTATTT
TTGTTTGTAATAAAATTCAGATTGTTATTCTCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTACTAAACTGCGTCATTTTTAGCTTCTTCAAAATCTGCAGTTAGAAAGTTTCTGGT
AAATAAATATCTGCTTATCATTTCATTTAAATAAAAGGAGGATTACTCCCAAATAATTTA
ATTTCCTAGCTAAAAGTGATATTAGGCTTAACATAGTAATCGTAAAATAAAATTGGCACA
GAAAATAACTTTAAAGTTTCACTCTTGCATAGGGTATTGCTGCTTGTGTGTACATCTGTC
ACTCCACCAAAAGGGACCTAGTCAGTGTTTTTGAGACTTTTCTAATTATCTCAGAGCATG
AGATGGCCAAGTGTGGATGCTAAGGCTTAAGTTTTCCATTAGGATTCAGCAATGTAGGTT
TCAAATTTTATTTCTTGTCATTAGATTGTTTTTGCCATACTTTACACACTTAAAGGGAAA
ATTTATTATTGTTATTATTACATGCATCAATCACTACATAAAAATATCCCAGATAGGTAA
ATGGGAGAAAATAGTGGTTTTAAGACGTGGTGCCAAATGCAGAAAAAGCTATAGAACACT
TGCTTGTTTGTTTACAGTATGTTCCTGGGGATATCCAGGAGTGTCATTCTGGACACTGAG
TGCAGTTCAGCCTTATTTGGTTGTGTTTTGTTTGTCTGTTTTTGAGTACTTGTATTGCCA
AACTCGTACTTTTTAAGTCCTGATTATCCTTGATCATGAAAGGAAAGGAGTCACAGGGAT
AATTAAAATCCACAGCCAGTTTCATCAGTATCCTCACCCATCAGCCCTTCAAACAGAAGA
GCGAAATTTGTTGTTCTGGTTTTATCATTTATTCTAATCATCATTTTTTTTTTGGGGGGA
GTGTTAGAAATAGCAGACAGACAAGCAAGTGTCTAAAAGGCCCCAGTCTGAAAAATTTAC
AAACAATCCTTGAATAAGCCCTATTTACATTTTATTCTTGCCTCCAGGGAAAGAAAACAA
AGCTTTTATCTAGAGGGAAAAACTCCTCAGAACTAAAAATAGCTTTTTTGAGTCAAATAA
AAATCAGTTAAAAGTATTTACCTGATAGCAACATAGCATATTGAAAAGATCTGTTTAAAA
GTTGTTTACAAATGTTTGACTATTTTTGCTGAAGTATTTTAGAGTATTGAATGTCTTTTT
TTCTCCAAGTTTCTTTTATGTTCCTAGTTTCAGCTCCTGCCTGTAGCCGGAGATCACGGG
TCTTCCCTGTGAAACTTTTGTTTCTTTCTGTAAGTGTGTGTGGTTTTCAGTGGTCAAAAC
TCCTCTCTTCAAATGGTAGGAAGTTCTACTTCTGTCATTTAGAACATTTTATGTAAAATG
ATGTAATGCAGAAATCCTTGTGCATACTGTATAATTGAAGGAAGCTTTTTAGATTTATTT
TTGTTTGTAATAAAATTCAGATTGTTATTCTCAACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1415, gnl|bosTau2|chr9 (32543746-32545146)
               

               
               1-1415, gnl|Hg17|chr6 (91281398-91280018)
               

               
               1-1415, gnl|Mm7|chr4 (32299517-32300805)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1415, gnl|bosTau2|chr9 (32543746-32545146)
               

               
               1-1415, gnl|Hg17|chr6 (91281398-91280018)
               

               
               1-1415, gnl|Mm7|chr4 (32299517-32300805)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               fat (0.442282)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               fli (0.202881)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.442282)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               fli (0.202881)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	1-1415, gnl\|bosTau2\|chr9 (32543746-32545146)
	1-1415, gnl\|Hg17\|chr6 (91281398-91280018)
	1-1415, gnl\|Mm7\|chr4 (32299517-32300805)

	fat (0.442282)
	vin (0.332557)
	cte (0.29274)
	liv (0.292569)
	lyg (0.266205)
	thg (0.253582)
	fli (0.202881)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	spc (0.113366)