Non-Coding RNA Search

Ss1.1-Pig4-TMW8035P13.5

Sequence:


               
               AGTACTACCCCTAGAAAAACAGCTCTGTCATTGCTGTTGATAAATATGAAAATTAATCAA
ACCCATGCTGGCTTACGCCCATGAAAGCCATCAACTTATTTTAAGTTTTTCCAGGCACAC
CTAATCTTCTGTTTGCTTCAAGGCCCTGGTGGAGGCCTCAGCCCCACAACACTTTCTCAT
TAAATGCTTATTGACAGGCTAGTCTAGTAACCATGGGTGGTTATCAAAGGGAAAGACCAG
CTGGGAAGGAAATGTGATTAGGCTTGGCGTTCTGAGAGGCTTACACCTACAAAGAAGATT
TGAAAATCAATAACTGAAAACTTTGAAAAGTACTTGAGTCCACACAATGTTTAAAGCAGT
TATCTAAATAAGGTCACTTAATGTAACACAGATTATATACTTAGAGTGTGGGTGATCATT
AATAACATATGGCTTTAATTTGGGGCTGAAAAAAATGTTATCTGTATTAGGAGGCAAAAT
ATATTGCAATTAAATGCAAAATGTTTCATTTTTAATATATAGATTTTAATTGCTTTTCTT
ACTTATATTTAGAAATTTCCAGCATGGTATTACTTTGCATATTTTTTCTAATTAAATGGT
TAGCACAGAAGAGATCTTCATAGATGTCTAACTGAAAACCAAGAACCACATACTTTCAAG
TTGTTATAAAGAAATATATCCTGAATCATATAGTTACTTTTACAGTGATTGTATGGGTTA
AAAAAATAATTAAAATGTGAAGTGTAGAAACTTGCAAATTTGGAATAGACAAGTACTGAT
TTTTTCATTTGTTAGTACTCCTACTATATTTAATCACATTAAAAAACAACCAAATAGTTT
TTTTTTTTTCCCCTGATGGATGGCTTGATTTTTTTTTTTTTTCTAACATGTTATGACTGT
TTATTCTAACTGATAAAATATGAGGGAGGGAAAAAACAACTTGAAATAAAAGCACTCAAA
TTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACTACCCCTAGAAAAACAGCTCTGTCATTGCTGTTGATAAATATGAAAATTAATCAA
ACCCATGCTGGCTTACGCCCATGAAAGCCATCAACTTATTTTAAGTTTTTCCAGGCACAC
CTAATCTTCTGTTTGCTTCAAGGCCCTGGTGGAGGCCTCAGCCCCACAACACTTTCTCAT
TAAATGCTTATTGACAGGCTAGTCTAGTAACCATGGGTGGTTATCAAAGGGAAAGACCAG
CTGGGAAGGAAATGTGATTAGGCTTGGCGTTCTGAGAGGCTTACACCTACAAAGAAGATT
TGAAAATCAATAACTGAAAACTTTGAAAAGTACTTGAGTCCACACAATGTTTAAAGCAGT
TATCTAAATAAGGTCACTTAATGTAACACAGATTATATACTTAGAGTGTGGGTGATCATT
AATAACATATGGCTTTAATTTGGGGCTGAAAAAAATGTTATCTGTATTAGGAGGCAAAAT
ATATTGCAATTAAATGCAAAATGTTTCATTTTTAATATATAGATTTTAATTGCTTTTCTT
ACTTATATTTAGAAATTTCCAGCATGGTATTACTTTGCATATTTTTTCTAATTAAATGGT
TAGCACAGAAGAGATCTTCATAGATGTCTAACTGAAAACCAAGAACCACATACTTTCAAG
TTGTTATAAAGAAATATATCCTGAATCATATAGTTACTTTTACAGTGATTGTATGGGTTA
AAAAAATAATTAAAATGTGAAGTGTAGAAACTTGCAAATTTGGAATAGACAAGTACTGAT
TTTTTCATTTGTTAGTACTCCTACTATATTTAATCACATTAAAAAACAACCAAATAGTTT
TTTTTTTTTCCCCTGATGGATGGCTTGATTTTTTTTTTTTTTCTAACATGTTATGACTGT
TTATTCTAACTGATAAAATATGAGGGAGGGAAAAAACAACTTGAAATAAAAGCACTCAAA
TTCAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-963, gnl|bosTau2|chr10 (42866162-42865210)
               

               
               5-963, gnl|Hg17|chr15 (46382579-46383565)
               

               
               5-963, gnl|Mm7|chr2 (124969922-124970840)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-963, gnl|bosTau2|chr10 (42866162-42865210)
               

               
               5-963, gnl|Hg17|chr15 (46382579-46383565)
               

               
               5-963, gnl|Mm7|chr2 (124969922-124970840)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (1.68656)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.68656)

	5-963, gnl\|bosTau2\|chr10 (42866162-42865210)
	5-963, gnl\|Hg17\|chr15 (46382579-46383565)
	5-963, gnl\|Mm7\|chr2 (124969922-124970840)