Ss1.1-Pig4-TMW8035P15.5
|
GTTGATGGCGTCTGCTGGAGCCTGCAGAAGACTCAAGTGCAGCTCAGAACTGTTTTGTAG
CGTGTTGATAAACTGGCTTTGTTTTCCTCCAGCAGTGCCCCGAGACTTCCCGTACGAAGA
GGACTCCAGACCCCGTTCACAGTCTTCCAAAGCTGCTATCCCTCCCCCGGTGTACGAGGA
ACAGGACAGACCCAGATCCCCGACCGGCCCGGGCAACTCCTTCCTCGCCAACATGGGTGG
CACCGTAGCACATAAAATCATGCAGAAGTACGGCTTCCGGGAAGGCCAGGGCCTCGGGAA
GCACGAGCAGGGGCTGAGCACGGCGCTGTCGGTGGAGAAGACCAGCAAGCGGGGAGGCAA
GATCATCGTGGGCGACGCCACCGAGAAAGATGCAGCCAAGAAGTCGGACTCAAATCCACT
GACTGAAATACTCAAGTGTCCTACGAAGGTGGTCCTGCTAAGGAACATGGTCGGCGCGGG
GGAGGTCGATGAAGACCTGGAGGTGGAAACCAAGGAAGAGTGTGAGAAGTACGGCAAAGT
CGGAAAATGTGTGATATTTGAAATCCCGGGGGCCCCTGATGATGAGGCCGTACGCATATT
TCTAGAGTTTGAGAGGGTCGAATCAGCAATTAAAGCTGTTGTCGATCTGAATGGGAGGTA
TTTTGGTGGACGGGTGGTCAAAGCATGTTTCTACAACTTGGATAAATTCAGGGTCTTGGA
TTTGGCAGAACAAGTTTGATTTTAAGAACTAGAGCCCACGTCATCTCCAAAGATCCTTTG
ATGAACTGCACGCTGAGAAGAGAAAAACGCGCCAGCCAGCCCGCACGGCTGTGGCACAGA
GACTCCAGGAGGACTCTGACACTTACCTTGACTGATCCCTTTTTTATTTTGTGGAGTTTT
TTAATATAGTATAAAAAATCCTTAAAAAGAAAAAAAACACACACACAAAGCAAAACAAAA
AACCAATCTGTGTGCCTCTCTGGTTGTTCCCCTTTTCTTACCACTTCGGAGGTGATCACC
CTTTTGCTAGGATTTCACGATACTTCTCAAGTGCTTCAGTGATACGTATTTCTTGCACTA
AAAAATCTAGACAGTTTTGGGATGTGGGGTTGTTACCCTTTGCTTTTCTTTCTTTCCTTT
TTTGACTCATTTTAATAAAACCTGCCAGTTACTAAACTGTAGCTTCATAAGTTCTATAAT
AAAGTCTCATCTTGGCATTCTGCGCAAGGTGAAAAGCTCAGCTTTCTCTAGCAGAGAAAT
TCTTCTGGCTCCAGTCGCAGAAACCTCTTGACGGCCTGAATGAAGGTTGAAGAATTGTGA
ACCTTCCCTGACCTGTTGGGATGAAGCTCTTTTCAGTTAAGCCAAGCCAGCTTATAGTTG
GTGATGGACTTAGGGGTATTGGGGTGTAGAAATCATAAACATAGCATTGGTGTTCAGCGC
GTCAAGCCTAGTCTTTAAACCAGATGGACAGGTTAGCTCAGCGCCTCCTAGGGACACTGA
ATGGGCCCAGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTGATGGCGTCTGCTGGAGCCTGCAGAAGACTCAAGTGCAGCTCAGAACTGTTTTGTAG
CGTGTTGATAAACTGGCTTTGTTTTCCTCCAGCAGTGCCCCGAGACTTCCCGTACGAAGA
GGACTCCAGACCCCGTTCACAGTCTTCCAAAGCTGCTATCCCTCCCCCGGTGTACGAGGA
ACAGGACAGACCCAGATCCCCGACCGGCCCGGGCAACTCCTTCCTCGCCAACATGGGTGG
CACCGTAGCACATAAAATCATGCAGAAGTACGGCTTCCGGGAAGGCCAGGGCCTCGGGAA
GCACGAGCAGGGGCTGAGCACGGCGCTGTCGGTGGAGAAGACCAGCAAGCGGGGAGGCAA
GATCATCGTGGGCGACGCCACCGAGAAAGATGCAGCCAAGAAGTCGGACTCAAATCCACT
GACTGAAATACTCAAGTGTCCTACGAAGGTGGTCCTGCTAAGGAACATGGTCGGCGCGGG
GGAGGTCGATGAAGACCTGGAGGTGGAAACCAAGGAAGAGTGTGAGAAGTACGGCAAAGT
CGGAAAATGTGTGATATTTGAAATCCCGGGGGCCCCTGATGATGAGGCCGTACGCATATT
TCTAGAGTTTGAGAGGGTCGAATCAGCAATTAAAGCTGTTGTCGATCTGAATGGGAGGTA
TTTTGGTGGACGGGTGGTCAAAGCATGTTTCTACAACTTGGATAAATTCAGGGTCTTGGA
TTTGGCAGAACAAGTTTGATTTTAAGAACTAGAGCCCACGTCATCTCCAAAGATCCTTTG
ATGAACTGCACGCTGAGAAGAGAAAAACGCGCCAGCCAGCCCGCACGGCTGTGGCACAGA
GACTCCAGGAGGACTCTGACACTTACCTTGACTGATCCCTTTTTTATTTTGTGGAGTTTT
TTAATATAGTATAAAAAATCCTTAAAAAGAAAAAAAACACACACACAAAGCAAAACAAAA
AACCAATCTGTGTGCCTCTCTGGTTGTTCCCCTTTTCTTACCACTTCGGAGGTGATCACC
CTTTTGCTAGGATTTCACGATACTTCTCAAGTGCTTCAGTGATACGTATTTCTTGCACTA
AAAAATCTAGACAGTTTTGGGATGTGGGGTTGTTACCCTTTGCTTTTCTTTCTTTCCTTT
TTTGACTCATTTTAATAAAACCTGCCAGTTACTAAACTGTAGCTTCATAAGTTCTATAAT
AAAGTCTCATCTTGGCATTCTGCGCAAGGTGAAAAGCTCAGCTTTCTCTAGCAGAGAAAT
TCTTCTGGCTCCAGTCGCAGAAACCTCTTGACGGCCTGAATGAAGGTTGAAGAATTGTGA
ACCTTCCCTGACCTGTTGGGATGAAGCTCTTTTCAGTTAAGCCAAGCCAGCTTATAGTTG
GTGATGGACTTAGGGGTATTGGGGTGTAGAAATCATAAACATAGCATTGGTGTTCAGCGC
GTCAAGCCTAGTCTTTAAACCAGATGGACAGGTTAGCTCAGCGCCTCCTAGGGACACTGA
ATGGGCCCAGTT
|
|
gi|57100557|ref|XP_533305.1| |
Protein identifier
|
gi|57100557|ref|XP_533305.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
78-237, gnl|bosTau2|chr13 (13058384-13058543) |
|
78-237, gnl|Hg17|chr10 (6191937-6192096) |
|
78-237, gnl|Mm7|chr6 (92652554-92652404) |
| |
|
239-392, gnl|bosTau2|chr13 (13060979-13061132) |
|
239-392, gnl|canFam2|chr2 (32676352-32676133) |
|
239-392, gnl|danRer3|chrNA (240056532-240056330) |
|
239-392, gnl|echTel1|scaffold_281497 (42305-42513) |
|
239-392, gnl|fr1|chrUn (280047533-280047338) |
|
239-392, gnl|galGal2|chr1 (100645-100412) |
|
239-392, gnl|hg17|chr10 (6194136-6194351) |
|
239-392, gnl|Hg17|chr10 (6194180-6194333) |
|
239-392, gnl|loxAfr1|scaffold_16568 (52340-52129) |
|
239-392, gnl|mm7|chr2 (11528287-11528081) |
|
239-392, gnl|Mm7|chr6 (92652402-92652249) |
|
239-392, gnl|monDom2|scaffold_30 (2185415-2185613) |
|
239-392, gnl|oryCun1|scaffold_198702 (47974-48184) |
|
239-392, gnl|panTro1|chr8 (6278239-6278454) |
|
239-392, gnl|rheMac2|chr9 (6396517-6396732) |
|
239-392, gnl|rn3|chr17 (78163847-78164055) |
|
239-392, gnl|tetNig1|chrUn_random (54858669-54858493) |
|
239-392, gnl|xenTro1|scaffold_20 (230322-230129) |
| |
|
634-1499, gnl|bosTau2|chr13 (13064252-13065105) |
|
634-1499, gnl|Hg17|chr10 (6197420-6198275) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
78-237, gnl|bosTau2|chr13 (13058384-13058543) |
|
78-237, gnl|Hg17|chr10 (6191937-6192096) |
|
78-237, gnl|Mm7|chr6 (92652554-92652404) |
| |
|
239-392, gnl|bosTau2|chr13 (13060979-13061132) |
|
239-392, gnl|canFam2|chr2 (32676352-32676133) |
|
239-392, gnl|danRer3|chrNA (240056532-240056330) |
|
239-392, gnl|echTel1|scaffold_281497 (42305-42513) |
|
239-392, gnl|fr1|chrUn (280047533-280047338) |
|
239-392, gnl|galGal2|chr1 (100645-100412) |
|
239-392, gnl|hg17|chr10 (6194136-6194351) |
|
239-392, gnl|Hg17|chr10 (6194180-6194333) |
|
239-392, gnl|loxAfr1|scaffold_16568 (52340-52129) |
|
239-392, gnl|mm7|chr2 (11528287-11528081) |
|
239-392, gnl|Mm7|chr6 (92652402-92652249) |
|
239-392, gnl|monDom2|scaffold_30 (2185415-2185613) |
|
239-392, gnl|oryCun1|scaffold_198702 (47974-48184) |
|
239-392, gnl|panTro1|chr8 (6278239-6278454) |
|
239-392, gnl|rheMac2|chr9 (6396517-6396732) |
|
239-392, gnl|rn3|chr17 (78163847-78164055) |
|
239-392, gnl|tetNig1|chrUn_random (54858669-54858493) |
|
239-392, gnl|xenTro1|scaffold_20 (230322-230129) |
| |
|
634-1499, gnl|bosTau2|chr13 (13064252-13065105) |
|
634-1499, gnl|Hg17|chr10 (6197420-6198275) |
|
pro (1.02407) |
|
spl (0.429553) |
|
pla (0.401016) |
|
thg (0.380373) |
|
ebs (0.236602) |
|
tes (0.207814) |
|
sag (0.182715) |
|
ill (0.175593) |
|
sin (0.174948) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ldo (0.0970026) |
|
pro (1.02407) |
|
spl (0.429553) |
|
pla (0.401016) |
|
thg (0.380373) |
|
ebs (0.236602) |
|
tes (0.207814) |
|
sag (0.182715) |
|
ill (0.175593) |
|
sin (0.174948) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ldo (0.0970026) |
