Non-Coding RNA Search

Ss1.1-Pig4-TMW8036A01.3

Sequence:


               
               TCAAAAGTTTTATTCAGGTACAGAGAAGTCCATGTGAATTGCGCACTGGGCCAGTATTAA
TTTTTTTTTTTTTTTTTTCATTCCAAGACTATTTATTCTTACTACAAGTAATAACAATAG
TCAGTATACTTGGGAAATGGAGTACAGTTTTTCAGCTGACATTTAAAACAGATGTAATTG
ACATTATTCTAACATGTAAGATCAACAAACAGTTAACTACATGGCCAGTATCTAATGTAG
AACTTTATTTTCTACTGTATTAATAAACTAAAGGCAAGAAAATATCAAGTGAATTTTAAA
GGCAAATCTTTACTCCTTAAAGAAAAAATACAAACGGTAGTACTTTTATAATAGATCGTT
ATATTTTACATAATATAAACAAAAGCACTAATCTTATGTCTAGTTTCCTTAAACTACAAT
GAATCACAGCATGGGTGAAAAAAATGGGTTTACTCGTTGGCAGCAAATAAACAACTTGGG
AAAGGGGGTAGCATGCATTTATTTTTTAAACTGTCTATGCGCAGGCACTGACATAACCAA
GCTTTAATAGCCACCACCGCCTCTTCCTTGTCCAGGGTAGCCACTCCCATAGCCCCCTCC
TCTGCTACTTCCTCGCTGGAATCCCCCAGATCCTCTGTAGCCTCCACCACCAGACCCTCT
GTAGTCTCCTCCTGACCCACCTCTATAGCCACCTCGGGAACCCCCTCTGTAGCCTCCGCC
ACCACCTCCACCTCCACCATAGCCTCCCTGATAGGAGTTGGAGCCACCACTATAGCTGCC
GCCACTGAAGCCTCCATTATCATTGAAACCTCCGTTACCATTGAAGCCTCCACTACCACT
GAAGCCTCCACCACCACTGAAGCCTCCACCACCCCCATAGCCTCCATTACCCCCAAAGCC
TCCACCACCCCCATAGCCACCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAAAGTTTTATTCAGGTACAGAGAAGTCCATGTGAATTGCGCACTGGGCCAGTATTAA
TTTTTTTTTTTTTTTTTTCATTCCAAGACTATTTATTCTTACTACAAGTAATAACAATAG
TCAGTATACTTGGGAAATGGAGTACAGTTTTTCAGCTGACATTTAAAACAGATGTAATTG
ACATTATTCTAACATGTAAGATCAACAAACAGTTAACTACATGGCCAGTATCTAATGTAG
AACTTTATTTTCTACTGTATTAATAAACTAAAGGCAAGAAAATATCAAGTGAATTTTAAA
GGCAAATCTTTACTCCTTAAAGAAAAAATACAAACGGTAGTACTTTTATAATAGATCGTT
ATATTTTACATAATATAAACAAAAGCACTAATCTTATGTCTAGTTTCCTTAAACTACAAT
GAATCACAGCATGGGTGAAAAAAATGGGTTTACTCGTTGGCAGCAAATAAACAACTTGGG
AAAGGGGGTAGCATGCATTTATTTTTTAAACTGTCTATGCGCAGGCACTGACATAACCAA
GCTTTAATAGCCACCACCGCCTCTTCCTTGTCCAGGGTAGCCACTCCCATAGCCCCCTCC
TCTGCTACTTCCTCGCTGGAATCCCCCAGATCCTCTGTAGCCTCCACCACCAGACCCTCT
GTAGTCTCCTCCTGACCCACCTCTATAGCCACCTCGGGAACCCCCTCTGTAGCCTCCGCC
ACCACCTCCACCTCCACCATAGCCTCCCTGATAGGAGTTGGAGCCACCACTATAGCTGCC
GCCACTGAAGCCTCCATTATCATTGAAACCTCCGTTACCATTGAAGCCTCCACTACCACT
GAAGCCTCCACCACCACTGAAGCCTCCACCACCCCCATAGCCTCCATTACCCCCAAAGCC
TCCACCACCCCCATAGCCACCACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               686-870, - strand, RNAz p=0.999116

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               686-870, - strand, RNAz p=0.999116

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-870, gnl|bosTau2|chr16 (45366917-45367791)
               

               
               1-870, gnl|Hg17|chr1 (179588762-179587957)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-870, gnl|bosTau2|chr16 (45366917-45367791)
               

               
               1-870, gnl|Hg17|chr1 (179588762-179587957)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

Help | Less info


               
               thg (0.760746)
               

               
               mgp (0.692042)
               

               
               hea (0.613497)
               

               
               ski (0.586941)
               

               
               mgm (0.541028)
               

               
               sto (0.539471)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               bfe (0.449573)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.760746)
               

               
               mgp (0.692042)
               

               
               hea (0.613497)
               

               
               ski (0.586941)
               

               
               mgm (0.541028)
               

               
               sto (0.539471)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               spc (0.453463)
               

               
               bfe (0.449573)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-870, gnl\|bosTau2\|chr16 (45366917-45367791)
	1-870, gnl\|Hg17\|chr1 (179588762-179587957)

	thg (0.760746)
	mgp (0.692042)
	hea (0.613497)
	ski (0.586941)
	mgm (0.541028)
	sto (0.539471)
	duo (0.518403)
	pro (0.512033)
	cki (0.495704)
	cbe (0.478469)
	spc (0.453463)
	bfe (0.449573)
	amn (0.417711)
	tes (0.415628)
	kid (0.389206)
	bla (0.373042)
	rec (0.346141)
	vin (0.332557)
	isp (0.300752)
	eje (0.296501)
	cte (0.29274)
	lin (0.291206)
	csk (0.281492)
	hlv (0.278513)
	che (0.272628)
	lyg (0.266205)
	ova (0.258264)
	pgl (0.236967)
	ece (0.229305)
	fli (0.202881)
	jej (0.197844)
	fcc (0.197785)
	nlu (0.191681)
	gul (0.177588)
	ton (0.1755)
	fbs (0.175346)
	mcp (0.170648)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	ctl (0.153069)
	cli (0.152812)
	fat (0.147427)
	pty (0.142714)
	lnt (0.142308)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	sug (0.127291)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	ecc (0.115035)
	jca (0.11396)
	ldo (0.0970026)