Non-Coding RNA Search

Ss1.1-Pig4-TMW8036A03.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTCTTGTTAGCAAAACCACTTTATTCTGATCGTTTTAACA
AATGTGCACTAGCAATCCAGGGAGCTTCCAGGTCTACGCTTCCCAGCGCCTCAGTGTCCG
ATGCATGAGGAAGGTGTCCTCTGAAGGGCGAGGCCGGAGTTGAAGCCGGAGAGGGGGCAA
GCCTTCCAGGGTCAGGTGTGGAGATTCATAAAATAGTGTTTCTGGATCACACAAAATAGT
CATGTCTGGCCCTGGCCCAGGTGGCTCCTTTGGAGGCGGGGCTCGGGCCTGCGGCGGCAG
GAGCGCCAGTTTCTCCCGCAGCGCGGCCTTCAGAACTTGTTCCTCGGGCACCTGCAGGCT
CACCAGGTCCCGAAAGAGCCGCTTGGAGCGCGGCACGTTCAACCCCTCCGCCACGCTCTC
CTCCAGGCCGCAGCGGGTCTGGAATGACTTCCTCAGCTGTTCCTCCACGGCCTTCGCGGC
ATCGAACTGGCCCCTGGCTGCGGCCCGTGCAGCCTGCAGCTCGAGGCTCAGGGCCAGGCT
GCTCTGCTGCGCGGGCGCCCCCAGGTCCTGCGACGCCGCAGGTTTCTCGTTCGGTGCGGC
AGCGGCCGGCGGCGGCTCGGACCTGACCGGGGAGGGCGGCGCCAGGCGGAAGCGGACCTG
CCGTCCCTTGCGAGGTGTCCCATCACCTCTGAACCCCAGCAGAGCTTCCCAGTTTGAGTG
AGGACCTGGCTCACTGACGCCAGCCCGTCTCCCTCCTAGGACTCTGGGCATCGTGGCTTC
CTGATGGAGAGGCTGACTGGAAGCTGCAGCTCACTGGCGAGGTGTTGGAGGTGGCCCTGG
TATCGTACCACTTATCACAAGCCACACCGACTCCAGCTCTGACTCCCTACAGCCCATCAT
CTTGGCGGGGGTCGCTGGGGGCCAAGGGTCACGAAGCGCGGCCTCACCACCTCCTCTCCC
CCGCCCTTCCTGAAAACCGTTGGCCCCTTCCCCAGGCGGGGGGGGAAAAGCTACTCCTTG
ATGTTCTGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTCTTGTTAGCAAAACCACTTTATTCTGATCGTTTTAACA
AATGTGCACTAGCAATCCAGGGAGCTTCCAGGTCTACGCTTCCCAGCGCCTCAGTGTCCG
ATGCATGAGGAAGGTGTCCTCTGAAGGGCGAGGCCGGAGTTGAAGCCGGAGAGGGGGCAA
GCCTTCCAGGGTCAGGTGTGGAGATTCATAAAATAGTGTTTCTGGATCACACAAAATAGT
CATGTCTGGCCCTGGCCCAGGTGGCTCCTTTGGAGGCGGGGCTCGGGCCTGCGGCGGCAG
GAGCGCCAGTTTCTCCCGCAGCGCGGCCTTCAGAACTTGTTCCTCGGGCACCTGCAGGCT
CACCAGGTCCCGAAAGAGCCGCTTGGAGCGCGGCACGTTCAACCCCTCCGCCACGCTCTC
CTCCAGGCCGCAGCGGGTCTGGAATGACTTCCTCAGCTGTTCCTCCACGGCCTTCGCGGC
ATCGAACTGGCCCCTGGCTGCGGCCCGTGCAGCCTGCAGCTCGAGGCTCAGGGCCAGGCT
GCTCTGCTGCGCGGGCGCCCCCAGGTCCTGCGACGCCGCAGGTTTCTCGTTCGGTGCGGC
AGCGGCCGGCGGCGGCTCGGACCTGACCGGGGAGGGCGGCGCCAGGCGGAAGCGGACCTG
CCGTCCCTTGCGAGGTGTCCCATCACCTCTGAACCCCAGCAGAGCTTCCCAGTTTGAGTG
AGGACCTGGCTCACTGACGCCAGCCCGTCTCCCTCCTAGGACTCTGGGCATCGTGGCTTC
CTGATGGAGAGGCTGACTGGAAGCTGCAGCTCACTGGCGAGGTGTTGGAGGTGGCCCTGG
TATCGTACCACTTATCACAAGCCACACCGACTCCAGCTCTGACTCCCTACAGCCCATCAT
CTTGGCGGGGGTCGCTGGGGGCCAAGGGTCACGAAGCGCGGCCTCACCACCTCCTCTCCC
CCGCCCTTCCTGAAAACCGTTGGCCCCTTCCCCAGGCGGGGGGGGAAAAGCTACTCCTTG
ATGTTCTGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8TAP8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8TAP8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               149-275, - strand, RNAz p=0.998423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-275, - strand, RNAz p=0.998423

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               24-275, gnl|bosTau2|chr25 (32516026-32515764)
               

               
               24-275, gnl|canFam2|chr6 (12239994-12239769)
               

               
               24-275, gnl|dasNov1|scaffold_9259 (14590-14813)
               

               
               24-275, gnl|echTel1|scaffold_314139 (44414-44179)
               

               
               24-275, gnl|hg17|chr7 (99677544-99677768)
               

               
               24-275, gnl|Hg17|chr7 (99677557-99677814)
               

               
               24-275, gnl|loxAfr1|scaffold_23018 (23855-23626)
               

               
               24-275, gnl|mm7|chr5 (136698129-136697897)
               

               
               24-275, gnl|Mm7|chr5 (136698111-136697847)
               

               
               24-275, gnl|monDom2|scaffold_66 (2208632-2208886)
               

               
               24-275, gnl|panTro1|chr6 (101461904-101462128)
               

               
               24-275, gnl|rheMac2|chr3 (47607544-47607771)
               

               
               24-275, gnl|rn3|chr12 (19836973-19836744)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-275, gnl|bosTau2|chr25 (32516026-32515764)
               

               
               24-275, gnl|canFam2|chr6 (12239994-12239769)
               

               
               24-275, gnl|dasNov1|scaffold_9259 (14590-14813)
               

               
               24-275, gnl|echTel1|scaffold_314139 (44414-44179)
               

               
               24-275, gnl|hg17|chr7 (99677544-99677768)
               

               
               24-275, gnl|Hg17|chr7 (99677557-99677814)
               

               
               24-275, gnl|loxAfr1|scaffold_23018 (23855-23626)
               

               
               24-275, gnl|mm7|chr5 (136698129-136697897)
               

               
               24-275, gnl|Mm7|chr5 (136698111-136697847)
               

               
               24-275, gnl|monDom2|scaffold_66 (2208632-2208886)
               

               
               24-275, gnl|panTro1|chr6 (101461904-101462128)
               

               
               24-275, gnl|rheMac2|chr3 (47607544-47607771)
               

               
               24-275, gnl|rn3|chr12 (19836973-19836744)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	24-275, gnl\|bosTau2\|chr25 (32516026-32515764)
	24-275, gnl\|canFam2\|chr6 (12239994-12239769)
	24-275, gnl\|dasNov1\|scaffold_9259 (14590-14813)
	24-275, gnl\|echTel1\|scaffold_314139 (44414-44179)
	24-275, gnl\|hg17\|chr7 (99677544-99677768)
	24-275, gnl\|Hg17\|chr7 (99677557-99677814)
	24-275, gnl\|loxAfr1\|scaffold_23018 (23855-23626)
	24-275, gnl\|mm7\|chr5 (136698129-136697897)
	24-275, gnl\|Mm7\|chr5 (136698111-136697847)
	24-275, gnl\|monDom2\|scaffold_66 (2208632-2208886)
	24-275, gnl\|panTro1\|chr6 (101461904-101462128)
	24-275, gnl\|rheMac2\|chr3 (47607544-47607771)
	24-275, gnl\|rn3\|chr12 (19836973-19836744)

	fbs (0.350693)
	fce (0.271592)
	ill (0.175593)
	fhi (0.169578)
	hyp (0.142837)
	cov (0.132153)
	ebs (0.118301)
	med (0.116252)