Ss1.1-Pig4-TMW8036A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTCCATTGAAAGGGCTAAAGAACTTTTTCATGAGCTCATATATGAAGGCATTAATGTG GATGTTATTCATGCAGACAGAACACAGCAACAGAGAGATAACACAGTTCACAGCTTCAGA GCAGGAAAAATCTGGGTTCTTATTTGCACAGCCTTGCTAGCCAGAGGGATCGATTTTAAA GGTGTGAACTTGGTGATCAACTATGACTTTCCAACCAGCTCAGTGGAATATATCCACCGG ATAGGTCGAACCGGAAGGGCGGGGCATAAAGGAAAAGCTGTTACATTTTTCACTGAAGAT GATAAACCATTATTAAGAAGTGTTGCCAATGTTATCCAGCAGGCCGGATGCCCTGTACCA GAATACATAAAAGGTTTCCAGAAACTACTCAGTAAACAGAAGAAAAGGATGATTAAGAAG CCTTTGGAAAGGGAGAGCATTTGTACAACTCCAAAATATTTCTTAGAAAAAGCTAAGGAA AAACGGAAAAAGGTCACTGGTCAGAACAGCAAAAAGAAAGTAGCTCCTGATGACAAAAGT TAAAAACAGACTTTTAAAAAGACTATCACAAAGGTAATTTTATGATGCCAGCATGAATGT TGTTTTCATGGAATACATCATCTTATAATCACCTGTACCAGACATTTGAAATCAACCACA AGAATGTAAGACGAGTGGAAAATGATCCTAAACTATCAGTGCATCATGTCAAGTTTCAAT TTATAGGTGATTTTTAAATGATTGTGGAAGCAACATTCATTGACATTGGTGCAGTTTGAA TCCAGAGAGATACTTCTTATAGAAGAACTAAAGCTTATGCTAAAAATACCAACACCCAAA TGTGGTGAACTCATGGATTTTTCCCTTCAAGTGTGAAGGAAGGTGTGGTGTATGCTGTGG AGAGGCATCTGGAACCATGTTGCAAACTAAAGCTTCCAAGATTTGAACATCCCTTCCCAT CCTTTTGTTTTTTTTCCTTTTTGGATGGACAAGAAGCAGCACAGCCTACCCATCATGAAT AAACATACTGCTGTCTTTAATTTGTTGATGGCTTTTTGTGGTATGAGCCACAACAAAGAA ATGCCTTTTATGTGGCTCGTTACTCAAGTTCCCTAGGATTTTAAATTCTTGGTCTGTTAA ATATCTTTATACCCTATCAGGACATATTTTATACCAAGCTCAGACCTTGCCTGTCATAAT GCTGCAGCTACAAGATGATGGTCAGCCTCTTCCTTTCTTTCTTCATTTTCCATCATTTAA TCATTTTCTTTCCTGTCTGTCTCCTTCCGTTTGAGATGACTTTGCTCGAAAACTGATAAA CATTTTATCCTGATAGGAAAGAATGTTCTTGTTACTTGATACACCTCTGGCTTCATTCTC TTAGATTATCTTTCCTAAGGCTTTATGACCCTTTATGCAGTTAGTACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTCCATTGAAAGGGCTAAAGAACTTTTTCATGAGCTCATATATGAAGGCATTAATGTG GATGTTATTCATGCAGACAGAACACAGCAACAGAGAGATAACACAGTTCACAGCTTCAGA GCAGGAAAAATCTGGGTTCTTATTTGCACAGCCTTGCTAGCCAGAGGGATCGATTTTAAA GGTGTGAACTTGGTGATCAACTATGACTTTCCAACCAGCTCAGTGGAATATATCCACCGG ATAGGTCGAACCGGAAGGGCGGGGCATAAAGGAAAAGCTGTTACATTTTTCACTGAAGAT GATAAACCATTATTAAGAAGTGTTGCCAATGTTATCCAGCAGGCCGGATGCCCTGTACCA GAATACATAAAAGGTTTCCAGAAACTACTCAGTAAACAGAAGAAAAGGATGATTAAGAAG CCTTTGGAAAGGGAGAGCATTTGTACAACTCCAAAATATTTCTTAGAAAAAGCTAAGGAA AAACGGAAAAAGGTCACTGGTCAGAACAGCAAAAAGAAAGTAGCTCCTGATGACAAAAGT TAAAAACAGACTTTTAAAAAGACTATCACAAAGGTAATTTTATGATGCCAGCATGAATGT TGTTTTCATGGAATACATCATCTTATAATCACCTGTACCAGACATTTGAAATCAACCACA AGAATGTAAGACGAGTGGAAAATGATCCTAAACTATCAGTGCATCATGTCAAGTTTCAAT TTATAGGTGATTTTTAAATGATTGTGGAAGCAACATTCATTGACATTGGTGCAGTTTGAA TCCAGAGAGATACTTCTTATAGAAGAACTAAAGCTTATGCTAAAAATACCAACACCCAAA TGTGGTGAACTCATGGATTTTTCCCTTCAAGTGTGAAGGAAGGTGTGGTGTATGCTGTGG AGAGGCATCTGGAACCATGTTGCAAACTAAAGCTTCCAAGATTTGAACATCCCTTCCCAT CCTTTTGTTTTTTTTCCTTTTTGGATGGACAAGAAGCAGCACAGCCTACCCATCATGAAT AAACATACTGCTGTCTTTAATTTGTTGATGGCTTTTTGTGGTATGAGCCACAACAAAGAA ATGCCTTTTATGTGGCTCGTTACTCAAGTTCCCTAGGATTTTAAATTCTTGGTCTGTTAA ATATCTTTATACCCTATCAGGACATATTTTATACCAAGCTCAGACCTTGCCTGTCATAAT GCTGCAGCTACAAGATGATGGTCAGCCTCTTCCTTTCTTTCTTCATTTTCCATCATTTAA TCATTTTCTTTCCTGTCTGTCTCCTTCCGTTTGAGATGACTTTGCTCGAAAACTGATAAA CATTTTATCCTGATAGGAAAGAATGTTCTTGTTACTTGATACACCTCTGGCTTCATTCTC TTAGATTATCTTTCCTAAGGCTTTATGACCCTTTATGCAGTTAGTACA |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 91-246, gnl|bosTau2|chr19 (6952565-6952720) | |
| 91-246, gnl|canFam2|chr9 (27576934-27576823) | |
| 91-246, gnl|danRer3|chr21 (35859947-35860058) | |
| 91-246, gnl|dasNov1|scaffold_70399 (6148-6259) | |
| 91-246, gnl|echTel1|scaffold_304612 (13372-13261) | |
| 91-246, gnl|fr1|chrUn (206438989-206438878) | |
| 91-246, gnl|galGal2|chr19 (8181524-8181635) | |
| 91-246, gnl|hg17|chr17 (33055285-33055396) | |
| 91-246, gnl|Hg17|chr17 (33055438-33055283) | |
| 91-246, gnl|loxAfr1|scaffold_9295 (22997-23079) | |
| 91-246, gnl|mm7|chr11 (84025349-84025238) | |
| 91-246, gnl|Mm7|chr11 (84025194-84025349) | |
| 91-246, gnl|monDom2|scaffold_135 (811069-810958) | |
| 91-246, gnl|oryCun1|scaffold_110053 (4934-4823) | |
| 91-246, gnl|panTro1|chr19 (36234273-36234384) | |
| 91-246, gnl|rheMac2|chr16 (47623894-47624005) | |
| 91-246, gnl|rn3|chr10 (72253055-72252944) | |
| 91-246, gnl|tetNig1|chr7 (3738458-3738569) | |
| 91-246, gnl|xenTro1|scaffold_566 (439845-439956) | |
| 485-932, gnl|bosTau2|chr19 (6958132-6958580) | |
| 485-932, gnl|Hg17|chr17 (33048512-33047923) | |
| 485-932, gnl|Mm7|chr11 (84031657-84032076) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-246, gnl|bosTau2|chr19 (6952565-6952720) | |
| 91-246, gnl|canFam2|chr9 (27576934-27576823) | |
| 91-246, gnl|danRer3|chr21 (35859947-35860058) | |
| 91-246, gnl|dasNov1|scaffold_70399 (6148-6259) | |
| 91-246, gnl|echTel1|scaffold_304612 (13372-13261) | |
| 91-246, gnl|fr1|chrUn (206438989-206438878) | |
| 91-246, gnl|galGal2|chr19 (8181524-8181635) | |
| 91-246, gnl|hg17|chr17 (33055285-33055396) | |
| 91-246, gnl|Hg17|chr17 (33055438-33055283) | |
| 91-246, gnl|loxAfr1|scaffold_9295 (22997-23079) | |
| 91-246, gnl|mm7|chr11 (84025349-84025238) | |
| 91-246, gnl|Mm7|chr11 (84025194-84025349) | |
| 91-246, gnl|monDom2|scaffold_135 (811069-810958) | |
| 91-246, gnl|oryCun1|scaffold_110053 (4934-4823) | |
| 91-246, gnl|panTro1|chr19 (36234273-36234384) | |
| 91-246, gnl|rheMac2|chr16 (47623894-47624005) | |
| 91-246, gnl|rn3|chr10 (72253055-72252944) | |
| 91-246, gnl|tetNig1|chr7 (3738458-3738569) | |
| 91-246, gnl|xenTro1|scaffold_566 (439845-439956) | |
| 485-932, gnl|bosTau2|chr19 (6958132-6958580) | |
| 485-932, gnl|Hg17|chr17 (33048512-33047923) | |
| 485-932, gnl|Mm7|chr11 (84031657-84032076) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| spl (0.143184) | |
| sug (0.127291) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| spl (0.143184) | |
| sug (0.127291) | |
| med (0.116252) | |
| jca (0.11396) |