Non-Coding RNA Search

Ss1.1-Pig4-TMW8036A09.3

Sequence:


               
               GGGGTCCTGAGCATCCCCCCCTCACAGCAGCCACTGAAAGATAATTTAATTCCAGATTGG
AAATGACCTTTTAGTTTATCAGATTGGTAACTTATCACCTGTTGTCCAGGTTGGCACGAA
CTTTTCTTCCACGACATTATTTTTTAATATTTTGCTTTCATTATGTGGGTGTGTTAGGTC
CTTTATTTTTTAAATTACTAAAGCAGATGTTTTAATATTTAGAAGATGTCCATCTTCTGG
ATTTTGTTGTACATTAGGGGAAGACATGGCTTATGTTGCTTAAGATTCTCAGGGATAAAC
TTACTTTGCTAGATGTGTTCTTTTCTGCTTTTAGAGACTAGACAAAACCATTTCTTGGGC
ACACATGTTTTGGGGGGGTGTTTTTTGGTTTGGTTTGGTTTTGTTTAATTTTATTCCTTG
AGGGAAGCATCATTTTCGGAGAGATTTTCTTTCTGTACCTTTTCACTCTTGTTTTAACTC
TTTTGAAGAGAAGGCTGTGGAGGACGGTCCCAGGACACGGGGCGGGACTTTGAGGGAGGA
AGAGGGGCCCAGCGTGCTCTGGGCGAAACCGGGCTGGCCCAGGGAACTGAGAGGAGGAGC
ATGTTACAATCCGACGCCCACGGCCACTGGTCCAAACCTCCTGTCCAGACAGACAGTGTT
TTCTGCGGGTGTCTTGGTCGTCTGAACATCTCCGTTTTCTTTTTGCTTCCATCTCATGCC
CTCTGCCCGCCCAGACTCTCCGCTTAGCCTAACAGCTGTCCACAACTGGAAGAGAGCTGG
GCAGCCCTGGACGGCCAGGCCGGTGACCAGCGCACCTCCTGCAGAAGCCGCCACCGCAGA
CCTGCCTGGCCCGGCGCTGTCTTTTAAGATGCCAGTGGGGTGGCACAGTCTTAGCACCAT
CAGTGTCACACTCCACTTCCTGCTCTCCAGACGCCTGCAAGGGGAGCCTTTCTTTCCGTG
GCAAAGAGCAATAAACTCTTAATTTGTGTGTGCCTGTGTGGACCGTGTCATCTTCCAGCA
TGATAGGATTCGACTGTTTTGGTGTAAACACTTGTGTTTTATAAGATTTACTTTGTTTTT
ATTTTTCTACTTTGAATTGTATACATTTGGAAAGTAACCAAATAAACGAGAATCTTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTCCTGAGCATCCCCCCCTCACAGCAGCCACTGAAAGATAATTTAATTCCAGATTGG
AAATGACCTTTTAGTTTATCAGATTGGTAACTTATCACCTGTTGTCCAGGTTGGCACGAA
CTTTTCTTCCACGACATTATTTTTTAATATTTTGCTTTCATTATGTGGGTGTGTTAGGTC
CTTTATTTTTTAAATTACTAAAGCAGATGTTTTAATATTTAGAAGATGTCCATCTTCTGG
ATTTTGTTGTACATTAGGGGAAGACATGGCTTATGTTGCTTAAGATTCTCAGGGATAAAC
TTACTTTGCTAGATGTGTTCTTTTCTGCTTTTAGAGACTAGACAAAACCATTTCTTGGGC
ACACATGTTTTGGGGGGGTGTTTTTTGGTTTGGTTTGGTTTTGTTTAATTTTATTCCTTG
AGGGAAGCATCATTTTCGGAGAGATTTTCTTTCTGTACCTTTTCACTCTTGTTTTAACTC
TTTTGAAGAGAAGGCTGTGGAGGACGGTCCCAGGACACGGGGCGGGACTTTGAGGGAGGA
AGAGGGGCCCAGCGTGCTCTGGGCGAAACCGGGCTGGCCCAGGGAACTGAGAGGAGGAGC
ATGTTACAATCCGACGCCCACGGCCACTGGTCCAAACCTCCTGTCCAGACAGACAGTGTT
TTCTGCGGGTGTCTTGGTCGTCTGAACATCTCCGTTTTCTTTTTGCTTCCATCTCATGCC
CTCTGCCCGCCCAGACTCTCCGCTTAGCCTAACAGCTGTCCACAACTGGAAGAGAGCTGG
GCAGCCCTGGACGGCCAGGCCGGTGACCAGCGCACCTCCTGCAGAAGCCGCCACCGCAGA
CCTGCCTGGCCCGGCGCTGTCTTTTAAGATGCCAGTGGGGTGGCACAGTCTTAGCACCAT
CAGTGTCACACTCCACTTCCTGCTCTCCAGACGCCTGCAAGGGGAGCCTTTCTTTCCGTG
GCAAAGAGCAATAAACTCTTAATTTGTGTGTGCCTGTGTGGACCGTGTCATCTTCCAGCA
TGATAGGATTCGACTGTTTTGGTGTAAACACTTGTGTTTTATAAGATTTACTTTGTTTTT
ATTTTTCTACTTTGAATTGTATACATTTGGAAAGTAACCAAATAAACGAGAATCTTATAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               483-601, - strand, RNAz p=0.520207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-601, - strand, RNAz p=0.520207

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-371, gnl|bosTau2|chr8 (52089045-52088670)
               

               
               2-371, gnl|Hg17|chr9 (89222838-89222453)
               

               
               2-371, gnl|Mm7|chr13 (50736437-50736021)
               


               
               407-1140, gnl|bosTau2|chr8 (52088654-52087930)
               

               
               407-1140, gnl|Hg17|chr9 (89222437-89221710)
               

               
               407-1140, gnl|Mm7|chr13 (50735981-50735344)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-371, gnl|bosTau2|chr8 (52089045-52088670)
               

               
               2-371, gnl|Hg17|chr9 (89222838-89222453)
               

               
               2-371, gnl|Mm7|chr13 (50736437-50736021)
               


               
               407-1140, gnl|bosTau2|chr8 (52088654-52087930)
               

               
               407-1140, gnl|Hg17|chr9 (89222437-89221710)
               

               
               407-1140, gnl|Mm7|chr13 (50735981-50735344)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fty (0.351679)
               

               
               med (0.232504)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               med (0.232504)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

	2-371, gnl\|bosTau2\|chr8 (52089045-52088670)
	2-371, gnl\|Hg17\|chr9 (89222838-89222453)
	2-371, gnl\|Mm7\|chr13 (50736437-50736021)

	407-1140, gnl\|bosTau2\|chr8 (52088654-52087930)
	407-1140, gnl\|Hg17\|chr9 (89222437-89221710)
	407-1140, gnl\|Mm7\|chr13 (50735981-50735344)

	fty (0.351679)
	med (0.232504)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	ese (0.126502)
	pgl (0.118483)