Non-Coding RNA Search

Ss1.1-Pig4-TMW8036A16.5

Sequence:


               
               GAACAACTTGGTTATCCAGGCAGGCTGAGGATTAAGTTTTGCTCCCTTGGGGAAATAGCA
GGGCTTCTGCAACTATGCACGATCTTTCAAATTGCAAGATTCATATCTGGATATATTATG
CTGTGGACAGCAGTTTGGCGGGGCATTTTTCTACTCTGAATTACTAGTTACCTAGCCAGG
ATCTGGCTTGGTTATTATGCCAGGTCACTACCTGCCTCCCACTTTAGGGGCGGGAGTGAA
CTATGGAAGAGCATCATGGCTGTGCAGGAGGCTGTGGTTTGAAAGCTGAGGCCAAAGGGG
GCCTTTTCCATCTGCACTCAATAATGTGTATGGGTTAATGCTAGGAGCAAAGGAGCAGGA
CTAGGTCCTTCCTCTCTCATCTGACTGTGCAGTATCCTATTGAGCACCCCTGTTCCTGGG
GTTGGGCATTCACAGAGCTCTGTTACAGTGAACATCTAGACTGTCAACACCTCTGCCCCT
CACAAAGGGCAGCCCTTTCCACTCAGTCCTCTGAACCATTTTGACAAGAGCTGTCCTTTT
GTTGTTGGAAGTCAGGGAAGGGCCTCCAGAAATCCCCTGGCTTTAGGAAATGTGATAGGG
GACGATGGGAAGTGTGAGCTGCATATCATAATTACTCTCCACTTGACTCCCTGATTGCAG
TGTATGAAGTAGAGGGGTGGGAGCCCCAAGGTGAGCGAGAACGGTGCTGCTTTATTTGAA
ATGTTTTCTTACCTCATTCTATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACAACTTGGTTATCCAGGCAGGCTGAGGATTAAGTTTTGCTCCCTTGGGGAAATAGCA
GGGCTTCTGCAACTATGCACGATCTTTCAAATTGCAAGATTCATATCTGGATATATTATG
CTGTGGACAGCAGTTTGGCGGGGCATTTTTCTACTCTGAATTACTAGTTACCTAGCCAGG
ATCTGGCTTGGTTATTATGCCAGGTCACTACCTGCCTCCCACTTTAGGGGCGGGAGTGAA
CTATGGAAGAGCATCATGGCTGTGCAGGAGGCTGTGGTTTGAAAGCTGAGGCCAAAGGGG
GCCTTTTCCATCTGCACTCAATAATGTGTATGGGTTAATGCTAGGAGCAAAGGAGCAGGA
CTAGGTCCTTCCTCTCTCATCTGACTGTGCAGTATCCTATTGAGCACCCCTGTTCCTGGG
GTTGGGCATTCACAGAGCTCTGTTACAGTGAACATCTAGACTGTCAACACCTCTGCCCCT
CACAAAGGGCAGCCCTTTCCACTCAGTCCTCTGAACCATTTTGACAAGAGCTGTCCTTTT
GTTGTTGGAAGTCAGGGAAGGGCCTCCAGAAATCCCCTGGCTTTAGGAAATGTGATAGGG
GACGATGGGAAGTGTGAGCTGCATATCATAATTACTCTCCACTTGACTCCCTGATTGCAG
TGTATGAAGTAGAGGGGTGGGAGCCCCAAGGTGAGCGAGAACGGTGCTGCTTTATTTGAA
ATGTTTTCTTACCTCATTCTATGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               126-266, - strand, RNAz p=0.999414
               

               
               461-692, - strand, RNAz p=0.997454

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-266, - strand, RNAz p=0.999414
               

               
               461-692, - strand, RNAz p=0.997454

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               592-719, + strand, RNAmicro p=0.999804
               

               
               592-719, - strand, RNAmicro p=0.999442

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               592-719, + strand, RNAmicro p=0.999804
               

               
               592-719, - strand, RNAmicro p=0.999442

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               182-261, LB03022.CR_K02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931404.1|), 
blast E-value=1e-17, identity=91.36% 
               

               
               182-261, 000705BMNA002746HT BMNA Bos taurus cDNA, mRNA sequence 
(gb|DY098494.1|), blast E-value=1e-17, identity=91.36% 
               

               
               182-261, 000710BMNA003444HT BMNA Bos taurus cDNA, mRNA sequence 
(gb|DY163634.1|), blast E-value=1e-17, identity=91.36% 
               

               
               182-261, LB02532.CR_K13 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340200.1|), 
blast E-value=1e-17, identity=91.36% 
               

               
               182-261, LB03041.CR_I04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374116.1|), 
blast E-value=1e-17, identity=91.36% 
               

               
               182-261, LB03048.CR_J15 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE377923.1|), 
blast E-value=1e-17, identity=91.36%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               182-261, LB03022.CR_K02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV931404.1|), 
blast E-value=1e-17, identity=91.36% 
               

               
               182-261, 000705BMNA002746HT BMNA Bos taurus cDNA, mRNA sequence 
(gb|DY098494.1|), blast E-value=1e-17, identity=91.36% 
               

               
               182-261, 000710BMNA003444HT BMNA Bos taurus cDNA, mRNA sequence 
(gb|DY163634.1|), blast E-value=1e-17, identity=91.36% 
               

               
               182-261, LB02532.CR_K13 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340200.1|), 
blast E-value=1e-17, identity=91.36% 
               

               
               182-261, LB03041.CR_I04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE374116.1|), 
blast E-value=1e-17, identity=91.36% 
               

               
               182-261, LB03048.CR_J15 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE377923.1|), 
blast E-value=1e-17, identity=91.36%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-744, gnl|bosTau2|chr19 (38101377-38102126)
               

               
               7-744, gnl|Hg17|chr17 (39627047-39626298)
               

               
               7-744, gnl|Mm7|chr11 (102400585-102399867)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-744, gnl|bosTau2|chr19 (38101377-38102126)
               

               
               7-744, gnl|Hg17|chr17 (39627047-39626298)
               

               
               7-744, gnl|Mm7|chr11 (102400585-102399867)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	126-266, - strand, RNAz p=0.999414
	461-692, - strand, RNAz p=0.997454

	592-719, + strand, RNAmicro p=0.999804
	592-719, - strand, RNAmicro p=0.999442

	182-261, LB03022.CR_K02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV931404.1\|), blast E-value=1e-17, identity=91.36%
	182-261, 000705BMNA002746HT BMNA Bos taurus cDNA, mRNA sequence (gb\|DY098494.1\|), blast E-value=1e-17, identity=91.36%
	182-261, 000710BMNA003444HT BMNA Bos taurus cDNA, mRNA sequence (gb\|DY163634.1\|), blast E-value=1e-17, identity=91.36%
	182-261, LB02532.CR_K13 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE340200.1\|), blast E-value=1e-17, identity=91.36%
	182-261, LB03041.CR_I04 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE374116.1\|), blast E-value=1e-17, identity=91.36%
	182-261, LB03048.CR_J15 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE377923.1\|), blast E-value=1e-17, identity=91.36%

	7-744, gnl\|bosTau2\|chr19 (38101377-38102126)
	7-744, gnl\|Hg17\|chr17 (39627047-39626298)
	7-744, gnl\|Mm7\|chr11 (102400585-102399867)