Non-Coding RNA Search

Ss1.1-Pig4-TMW8036A19.5

Sequence:


               
               GCCCAAGGTCCTCCTGCAGACAAGCTGGAACCTGGGCCTCTTCCATACTTCACATACCTG
CACCATCCAGCTTTCACTCATTTCACTATTTGCTGTCCAAAGTCACTTTGCAAGCAGTGT
TTGATCCAACAACCACTCTTTGTTCACTCTGCCCTGTCCAACTTCCAAGGCTTACTTATA
ATCCCTGTGCCAAACAAAATCAGTCATTACAGACTCCTCACGCTTGTCTGCACCACAGTG
AAGGTTGGGTAGGGTCCTGGGGGCTTCTTGCTGTGCCTCGCACTAGCTCTTTAGTATCCA
GTACTGGGTAAAGCTGCAGGAGAGCAATTGGGTAAGCTCAAGGCAGTGTGTGTTTCCCAC
CCAGATTGAAAGCACTCCGGTGATTAATTGGTAGAACTATGTTTTTGCTGCCCATGAATT
GTTGATCCTAGTGATACACCTCTTCCCCTGCCTATCCACTGCATCTTTCAGCCCTTCTCA
TGGAAAGTTTCACATCACCATGGCCTAACCAAAGTTAATTAATTCATCAGGCCCCAGCCA
AAGAGGAGTGGCCATTGTGTACCTGATAGACTGGGGGCCGTCTAGGGCATTTCTGTGTTA
ATTGTACAGGGCATTGCAGGGATGCTGAAAATCCTTGTACATAGGCAGCAAGGGTGCTTG
TAGAATGACACCCAGCTGTAGGCCTAAGTCTGCATCACAAATCTTTCCCCAGGCCAGGAT
CCAAGAAATAAGCAGGAAAAGGAATCCAAGAAATAAGCAGGAAGGAATTCTGAAGTCAGA
GGAATATTCAAATTTAGATAAAGTTCTTCTTTGGAGGAGAGGGATAATAATAGAAAATCC
TGCCTGCCCTCAGTGTGTTTGCTAATAATCTTCCTCTGGCTTTTTCTTTTCCACATTATA
TGGTTTTATCTTTTTAACAATTTTATCTACTTAGGGTTTATGGAATTCCAAAGTTTGACA
TACAGTTTCCCCAATATTGGTCAAAAGATACCACAGCAAAAGCTTCTCTTCCTCCAAAGT
GTAGAGAGGCAGCCATTGTCCTGGGGTAGGAAACGGTCCTGGCAAGAGTTACTTTTAAAG
ACCCCAAAATTTCAGTGGTTGTTGCTATGCCTGTGAAAGTACCTTCAACCTCCAAATCCC
CTGAGTTCTGAGGGGGTATCTCAGCTCTTTTCTAGTTTAATGAAACTGAAACAAATGTCT
GTAAAAGCTAGACTTGTGCATGTCCTTAGGGGTGGCTGGCCCTTCTCACTTCTCCCATAT
ACAATAAACTGATGGCTATGCAAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAAGGTCCTCCTGCAGACAAGCTGGAACCTGGGCCTCTTCCATACTTCACATACCTG
CACCATCCAGCTTTCACTCATTTCACTATTTGCTGTCCAAAGTCACTTTGCAAGCAGTGT
TTGATCCAACAACCACTCTTTGTTCACTCTGCCCTGTCCAACTTCCAAGGCTTACTTATA
ATCCCTGTGCCAAACAAAATCAGTCATTACAGACTCCTCACGCTTGTCTGCACCACAGTG
AAGGTTGGGTAGGGTCCTGGGGGCTTCTTGCTGTGCCTCGCACTAGCTCTTTAGTATCCA
GTACTGGGTAAAGCTGCAGGAGAGCAATTGGGTAAGCTCAAGGCAGTGTGTGTTTCCCAC
CCAGATTGAAAGCACTCCGGTGATTAATTGGTAGAACTATGTTTTTGCTGCCCATGAATT
GTTGATCCTAGTGATACACCTCTTCCCCTGCCTATCCACTGCATCTTTCAGCCCTTCTCA
TGGAAAGTTTCACATCACCATGGCCTAACCAAAGTTAATTAATTCATCAGGCCCCAGCCA
AAGAGGAGTGGCCATTGTGTACCTGATAGACTGGGGGCCGTCTAGGGCATTTCTGTGTTA
ATTGTACAGGGCATTGCAGGGATGCTGAAAATCCTTGTACATAGGCAGCAAGGGTGCTTG
TAGAATGACACCCAGCTGTAGGCCTAAGTCTGCATCACAAATCTTTCCCCAGGCCAGGAT
CCAAGAAATAAGCAGGAAAAGGAATCCAAGAAATAAGCAGGAAGGAATTCTGAAGTCAGA
GGAATATTCAAATTTAGATAAAGTTCTTCTTTGGAGGAGAGGGATAATAATAGAAAATCC
TGCCTGCCCTCAGTGTGTTTGCTAATAATCTTCCTCTGGCTTTTTCTTTTCCACATTATA
TGGTTTTATCTTTTTAACAATTTTATCTACTTAGGGTTTATGGAATTCCAAAGTTTGACA
TACAGTTTCCCCAATATTGGTCAAAAGATACCACAGCAAAAGCTTCTCTTCCTCCAAAGT
GTAGAGAGGCAGCCATTGTCCTGGGGTAGGAAACGGTCCTGGCAAGAGTTACTTTTAAAG
ACCCCAAAATTTCAGTGGTTGTTGCTATGCCTGTGAAAGTACCTTCAACCTCCAAATCCC
CTGAGTTCTGAGGGGGTATCTCAGCTCTTTTCTAGTTTAATGAAACTGAAACAAATGTCT
GTAAAAGCTAGACTTGTGCATGTCCTTAGGGGTGGCTGGCCCTTCTCACTTCTCCCATAT
ACAATAAACTGATGGCTATGCAAGAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               748-1285, gnl|bosTau2|chr5 (30526543-30525995)
               

               
               748-1285, gnl|Hg17|chrX (65287830-65288351)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               748-1285, gnl|bosTau2|chr5 (30526543-30525995)
               

               
               748-1285, gnl|Hg17|chrX (65287830-65288351)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               clu (0.598229)
               

               
               col (0.390016)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.598229)
               

               
               col (0.390016)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	748-1285, gnl\|bosTau2\|chr5 (30526543-30525995)
	748-1285, gnl\|Hg17\|chrX (65287830-65288351)

	clu (0.598229)
	col (0.390016)
	ton (0.1755)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	nmm (0.132802)
	cly (0.120642)
	eru (0.120048)
	jej (0.0989218)