Non-Coding RNA Search

Ss1.1-Pig4-TMW8036A21.3

Sequence:


               
               GTCTACGCCCCAGCCACAGCAACTTGGGATCTGGGTGGAATCGGCCATCTACACCGAAGC
TCGTGGCAATGCCAGATCCTTAACCCTCTCAAAGAGGCCAGGGCTCAAACCCTCATTCTC
ATGGCAACTAGTCAGATGTGTTTCCACTTCGCCACAGTGGGAACTCCCAAAAGGTCATTT
TTTTTTTATCTGAATAAAAGTAGTGAAATGAAGACTGTGGAAATTACATAAAACCTAAAA
GAGTAGGAGCCTAGTAGCAGCTTAGGGTTGTAAAGCTCCTTGCCTTAATTACTCATATGC
CAGACAAGCCCTCTTATTTTATATTTAGCTATGCATAGGTAAAAGGTTGAAAATGATCAG
TGACAGTTTTTCTTTGACTTTTTTTCACATAACTTTAGCATTTTTCTAGCTAATAACCAT
CATTGAATATTTCAGTTGAACAAAGCAGTTATAATTAGCCTTCTTTTCCAGATCACTGTT
AACTTGAATTTGATAATAATTTTGTGATTATTTTGTGCCACTTACAGTTTCTAATATTAT
GTGAAACATGGATTGTGTAAATATTTGATGCTGGGTCTGTGAAATGATACTTCTGAAATC
AAAACCTCTCTTCAAGGATGATGTTGTAAAAAGCCTCAATGTGTATACTCAGATATTTCA
ATGGTTGTCTCTTCAGAGAACTGTCTGCTTTTTAAAACTGGAAGTACCGAATTTTCTTGT
GTTAAAAGTTCCATGTTTCTTAATCAGAGTTGGAGCTGTAGGAGGTAATGCTCTTGGTGC
ATCTGTTAGTGTGGGAAGCTGACTGAAGATCACCAGTGTTGCCGTGTACCCTTGTGCCAA
CACGGGGCAATGTCGCTGCATTTCTGCAAGTGGGGTCAGAGGGCTTCTCTCTAGTTCTTG
TTTAATTAGACTCCAAAACAAGGTCTACATATTGAATGCGCTAGAGGTTGTCTGAAAGTA
TAGTATATACTGTATTATACCTCTGAAGTGTCGATTGCCTCTTTTTCAGTTGCTTCAAAA
CATAACACTGTCACTTGAGCTTGGAATCAGACTTGATTGAATTAATTACTGTTGAAAAAA
GATGCCCTGTGGAATTAAGTCTTTTTGCTTAAAGCCTCATTTCTTTTTTTTTAAGAAAAA
AAATATCAGCTTTATTGCTTTGCCAGGCAAAGGGAGGCCACAGCGGGCTGGTGCCGTAAA
GACTGTGCCCTCAAGCCTCATCTCACTTAAGTGCTGAACACTCACTTATTTTTGTTTAAA
ATACTACCTATAGCTGTTATCAGCACTTGTATTTTGCAGTTTGCTTACCTAGGAGTGGGA
ATTCGGGACTTGCCATGTAGTGTAAGATCAGTATGTGTACATTTATTGATAAGTGATCTG
AGGGAATCTGGAATGTTTCACTAAAATAAAGCTTAAGATTTTTCTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTACGCCCCAGCCACAGCAACTTGGGATCTGGGTGGAATCGGCCATCTACACCGAAGC
TCGTGGCAATGCCAGATCCTTAACCCTCTCAAAGAGGCCAGGGCTCAAACCCTCATTCTC
ATGGCAACTAGTCAGATGTGTTTCCACTTCGCCACAGTGGGAACTCCCAAAAGGTCATTT
TTTTTTTATCTGAATAAAAGTAGTGAAATGAAGACTGTGGAAATTACATAAAACCTAAAA
GAGTAGGAGCCTAGTAGCAGCTTAGGGTTGTAAAGCTCCTTGCCTTAATTACTCATATGC
CAGACAAGCCCTCTTATTTTATATTTAGCTATGCATAGGTAAAAGGTTGAAAATGATCAG
TGACAGTTTTTCTTTGACTTTTTTTCACATAACTTTAGCATTTTTCTAGCTAATAACCAT
CATTGAATATTTCAGTTGAACAAAGCAGTTATAATTAGCCTTCTTTTCCAGATCACTGTT
AACTTGAATTTGATAATAATTTTGTGATTATTTTGTGCCACTTACAGTTTCTAATATTAT
GTGAAACATGGATTGTGTAAATATTTGATGCTGGGTCTGTGAAATGATACTTCTGAAATC
AAAACCTCTCTTCAAGGATGATGTTGTAAAAAGCCTCAATGTGTATACTCAGATATTTCA
ATGGTTGTCTCTTCAGAGAACTGTCTGCTTTTTAAAACTGGAAGTACCGAATTTTCTTGT
GTTAAAAGTTCCATGTTTCTTAATCAGAGTTGGAGCTGTAGGAGGTAATGCTCTTGGTGC
ATCTGTTAGTGTGGGAAGCTGACTGAAGATCACCAGTGTTGCCGTGTACCCTTGTGCCAA
CACGGGGCAATGTCGCTGCATTTCTGCAAGTGGGGTCAGAGGGCTTCTCTCTAGTTCTTG
TTTAATTAGACTCCAAAACAAGGTCTACATATTGAATGCGCTAGAGGTTGTCTGAAAGTA
TAGTATATACTGTATTATACCTCTGAAGTGTCGATTGCCTCTTTTTCAGTTGCTTCAAAA
CATAACACTGTCACTTGAGCTTGGAATCAGACTTGATTGAATTAATTACTGTTGAAAAAA
GATGCCCTGTGGAATTAAGTCTTTTTGCTTAAAGCCTCATTTCTTTTTTTTTAAGAAAAA
AAATATCAGCTTTATTGCTTTGCCAGGCAAAGGGAGGCCACAGCGGGCTGGTGCCGTAAA
GACTGTGCCCTCAAGCCTCATCTCACTTAAGTGCTGAACACTCACTTATTTTTGTTTAAA
ATACTACCTATAGCTGTTATCAGCACTTGTATTTTGCAGTTTGCTTACCTAGGAGTGGGA
ATTCGGGACTTGCCATGTAGTGTAAGATCAGTATGTGTACATTTATTGATAAGTGATCTG
AGGGAATCTGGAATGTTTCACTAAAATAAAGCTTAAGATTTTTCTTAC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               168-1123, gnl|bosTau2|chr28 (1873226-1874145)
               

               
               168-1123, gnl|Hg17|chr1 (227776410-227775455)
               


               
               1213-1428, gnl|bosTau2|chr28 (1874134-1874358)
               

               
               1213-1428, gnl|Hg17|chr1 (227775466-227775240)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-1123, gnl|bosTau2|chr28 (1873226-1874145)
               

               
               168-1123, gnl|Hg17|chr1 (227776410-227775455)
               


               
               1213-1428, gnl|bosTau2|chr28 (1874134-1874358)
               

               
               1213-1428, gnl|Hg17|chr1 (227775466-227775240)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	168-1123, gnl\|bosTau2\|chr28 (1873226-1874145)
	168-1123, gnl\|Hg17\|chr1 (227776410-227775455)

	1213-1428, gnl\|bosTau2\|chr28 (1874134-1874358)
	1213-1428, gnl\|Hg17\|chr1 (227775466-227775240)

	pan (0.23596)
	mas (0.210305)
	tes (0.207814)
	nlu (0.191681)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	ski (0.146735)
	pla (0.133672)
	thg (0.126791)
	bla (0.124347)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)