Non-Coding RNA Search

Ss1.1-Pig4-TMW8036B05.3

Sequence:


               
               CACCCCCACCCCCACCGCCGCCCCTGGAGGACGACGAGCTCCCTCCGCCACCCCCTGATT
TTAACGACGCTCCCCCAGACTTCGTGCCTCCCCCACCGCCATCGATTGCGGGCGATGCTG
GGTTCTCCTTGCCGCCCCCCCCGCCACCCCCGCCCACCCTCGCCCCCGAAGCCGCGAAGC
AGTCCCCGGTGGTCTCCAAAAGGCCTCCAGTTGCCCCCAAGAGGCGGGAGAACCCTGGAC
CACCCGGCGGGGAAGGCGGGGAGCAAGATTTCATGTCGGATCTCATGAAAGCTTTGCAAA
AGAAGAGAGGCAACGTGGCCTAAGGGAAACTTAGAAATATCTTTGGGTGATGGGTATAGT
CATTGCTAACATCAAGTGCATTTTTGCTCCTTTTATTTTCATGACATCTTGTTCATTTTA
GATACAATATTGATGTATTCAGCCTAGAAATAATGCAAAACGTCTTCCTGTTGCTCAAGT
ACATTCGTAATCCTTAACCTAACACAGAATCTAGAACATCCACCTAAATGTACATATCTT
TCCTATGTATTTCCACTTCAGTGGCCGTTCTCTTACATGTTAACTAAAATGTTTTATGTT
CTTAATTTTATTGTTCTGAAGCATCAAATTAATAAAAGTTTAAAAAACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCCACCCCCACCGCCGCCCCTGGAGGACGACGAGCTCCCTCCGCCACCCCCTGATT
TTAACGACGCTCCCCCAGACTTCGTGCCTCCCCCACCGCCATCGATTGCGGGCGATGCTG
GGTTCTCCTTGCCGCCCCCCCCGCCACCCCCGCCCACCCTCGCCCCCGAAGCCGCGAAGC
AGTCCCCGGTGGTCTCCAAAAGGCCTCCAGTTGCCCCCAAGAGGCGGGAGAACCCTGGAC
CACCCGGCGGGGAAGGCGGGGAGCAAGATTTCATGTCGGATCTCATGAAAGCTTTGCAAA
AGAAGAGAGGCAACGTGGCCTAAGGGAAACTTAGAAATATCTTTGGGTGATGGGTATAGT
CATTGCTAACATCAAGTGCATTTTTGCTCCTTTTATTTTCATGACATCTTGTTCATTTTA
GATACAATATTGATGTATTCAGCCTAGAAATAATGCAAAACGTCTTCCTGTTGCTCAAGT
ACATTCGTAATCCTTAACCTAACACAGAATCTAGAACATCCACCTAAATGTACATATCTT
TCCTATGTATTTCCACTTCAGTGGCCGTTCTCTTACATGTTAACTAAAATGTTTTATGTT
CTTAATTTTATTGTTCTGAAGCATCAAATTAATAAAAGTTTAAAAAACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               392-662, gnl|bosTau2|chr11 (85736826-85736551)
               

               
               392-662, gnl|Hg17|chr10 (26896480-26896722)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               392-662, gnl|bosTau2|chr11 (85736826-85736551)
               

               
               392-662, gnl|Hg17|chr10 (26896480-26896722)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	392-662, gnl\|bosTau2\|chr11 (85736826-85736551)
	392-662, gnl\|Hg17\|chr10 (26896480-26896722)

	fty (0.17584)
	lyg (0.133103)
	kid (0.129735)
	med (0.116252)
	nbm (0.0993246)