Non-Coding RNA Search

Ss1.1-Pig4-TMW8036B06.3

Sequence:


               
               AAATGGGGGGAAAAAGTACAGTATTTGTAGATAAATTGTAGCTACTTCCCAGTTATTTGG
TAGTCCCAGTATAGTTATATCAGTGTTTACTGAAGGGAACATTAAAATATTAATGCTATA
TTATAAAGACTTTCTTAAAGGAAAATTGCACCTATTTTACCTTTTTAAGAGTAAGCCATG
AACTCTTGTAACTTCTCTTAACTATTTATAATGAAAGTTGGCATTTGGGTATAGTCACCA
CAGCACTGTTCTACATCCCTGAGATTGTAGAGGTAGGACATGTCACTCTGGATTCCCACT
GGAGAAAACTGTAAAGGGGTGACCTTGTAGAAAGGGTCTGAGTCCTCTCTCGGAGGGTCT
CTTTTTCTTGGTGCTTTATTAGCAACTCTGAATATTTTTATAAAACTAGTTACATTATAA
AAGGATTGCAACTTGTTTAATTTACATTAGGTTTCTGTGTAAGAAATGTCTCGGAAACAC
TCAGCGAGCAGGCTGATTGCCGTAGCTGACTCAGGAGTGTCAGACGTAACTCAGTATCTA
CTCATGGTGAGGAGTTCATCCCAGTGCCTTGAACCGGGATTTCTAATAGTAGGTGAAATG
GGTGCAGCCTTCCTTTGGGAAAAACAAACTGTCTTTTCAATTGGTACAGTTTTTCCCCTC
ATTTACGTTTTCTTTAGGGTACCTACTTTCTCTTCCTCCTTGGTCTGTCAGTTTATGGCA
CGTTGTTTTTCCTCTAAGTGCACAGATCACAGGTTGTCTCAGTCGCACAGCTAATGGAGG
TTTCTTAACTGTAGGGACCAAAAGGGAGAGAAACTGGGCTCCACAGAGGAGACTGATCAA
AAGTGGTGAATAATCACAAATGAAGACATTTTTGGCCCAGTAAATTTCTTGCATAATGTT
TTTCCAAGATCTGGTTTGAATGTTTATTAAAGTTATCTTATGTGGGTGTTTTATTTTGAA
AGGTATTATAGTTTGTATATTTAACAGTAAGGGGGGAAATGTAACCAAAATTAGTATTCT
TTCTCTATACATATTGGTACTTGAAGATTTCTTTCAGAAGAAACCCCAGCCTTTTCCTAA
GTTCAGTACTTAATTCCTCATTTTAACTTAAGTGATTTTCCTAATTCAAAAGCTGTGTTC
TTTTTAAATGCATGGGGGTTAAGCTGATGTTAAAACAGTTTGCAATAAAAAAAAGAATCA
GCTTAAGTCATTTAATCATTTCAAGTGCATTCTGCATCGTATAAAAATAAGTTTGAGAAA
TTTTAAGAGAATTGTGTTTCATTAAGTTTTGCATATCTTTTGTTATGCCATGTAAATTCC
CTTCTTTTTCATATGATTAAAGAAAGGTTATGATAAAATTATTAGTTCATTTACATTCAC
TTGTAGCAATGACATGAGAATTTGAATTTTGTCGTGTTTGGGTTTGTTCATTTCTGTGAA
TGATGGTACAGTTAGGTGAGATTTTCTGTTATGGTACCCAAACTCACCATTTGGTCCTCT
TTAATCTTTGAGGGTTTCAATAAAAATTGTTCACTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGGGGGGAAAAAGTACAGTATTTGTAGATAAATTGTAGCTACTTCCCAGTTATTTGG
TAGTCCCAGTATAGTTATATCAGTGTTTACTGAAGGGAACATTAAAATATTAATGCTATA
TTATAAAGACTTTCTTAAAGGAAAATTGCACCTATTTTACCTTTTTAAGAGTAAGCCATG
AACTCTTGTAACTTCTCTTAACTATTTATAATGAAAGTTGGCATTTGGGTATAGTCACCA
CAGCACTGTTCTACATCCCTGAGATTGTAGAGGTAGGACATGTCACTCTGGATTCCCACT
GGAGAAAACTGTAAAGGGGTGACCTTGTAGAAAGGGTCTGAGTCCTCTCTCGGAGGGTCT
CTTTTTCTTGGTGCTTTATTAGCAACTCTGAATATTTTTATAAAACTAGTTACATTATAA
AAGGATTGCAACTTGTTTAATTTACATTAGGTTTCTGTGTAAGAAATGTCTCGGAAACAC
TCAGCGAGCAGGCTGATTGCCGTAGCTGACTCAGGAGTGTCAGACGTAACTCAGTATCTA
CTCATGGTGAGGAGTTCATCCCAGTGCCTTGAACCGGGATTTCTAATAGTAGGTGAAATG
GGTGCAGCCTTCCTTTGGGAAAAACAAACTGTCTTTTCAATTGGTACAGTTTTTCCCCTC
ATTTACGTTTTCTTTAGGGTACCTACTTTCTCTTCCTCCTTGGTCTGTCAGTTTATGGCA
CGTTGTTTTTCCTCTAAGTGCACAGATCACAGGTTGTCTCAGTCGCACAGCTAATGGAGG
TTTCTTAACTGTAGGGACCAAAAGGGAGAGAAACTGGGCTCCACAGAGGAGACTGATCAA
AAGTGGTGAATAATCACAAATGAAGACATTTTTGGCCCAGTAAATTTCTTGCATAATGTT
TTTCCAAGATCTGGTTTGAATGTTTATTAAAGTTATCTTATGTGGGTGTTTTATTTTGAA
AGGTATTATAGTTTGTATATTTAACAGTAAGGGGGGAAATGTAACCAAAATTAGTATTCT
TTCTCTATACATATTGGTACTTGAAGATTTCTTTCAGAAGAAACCCCAGCCTTTTCCTAA
GTTCAGTACTTAATTCCTCATTTTAACTTAAGTGATTTTCCTAATTCAAAAGCTGTGTTC
TTTTTAAATGCATGGGGGTTAAGCTGATGTTAAAACAGTTTGCAATAAAAAAAAGAATCA
GCTTAAGTCATTTAATCATTTCAAGTGCATTCTGCATCGTATAAAAATAAGTTTGAGAAA
TTTTAAGAGAATTGTGTTTCATTAAGTTTTGCATATCTTTTGTTATGCCATGTAAATTCC
CTTCTTTTTCATATGATTAAAGAAAGGTTATGATAAAATTATTAGTTCATTTACATTCAC
TTGTAGCAATGACATGAGAATTTGAATTTTGTCGTGTTTGGGTTTGTTCATTTCTGTGAA
TGATGGTACAGTTAGGTGAGATTTTCTGTTATGGTACCCAAACTCACCATTTGGTCCTCT
TTAATCTTTGAGGGTTTCAATAAAAATTGTTCACTCAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1413-1530, + strand, RNAz p=0.766984

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1413-1530, + strand, RNAz p=0.766984

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1537, gnl|bosTau2|chr14 (17411879-17410336)
               

               
               6-1537, gnl|Hg17|chr8 (64286336-64287898)
               

               
               6-1537, gnl|Mm7|chr3 (15925948-15927511)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1537, gnl|bosTau2|chr14 (17411879-17410336)
               

               
               6-1537, gnl|Hg17|chr8 (64286336-64287898)
               

               
               6-1537, gnl|Mm7|chr3 (15925948-15927511)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               tra (0.61546)
               

               
               ret (0.514933)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.61546)
               

               
               ret (0.514933)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	6-1537, gnl\|bosTau2\|chr14 (17411879-17410336)
	6-1537, gnl\|Hg17\|chr8 (64286336-64287898)
	6-1537, gnl\|Mm7\|chr3 (15925948-15927511)

	tra (0.61546)
	ret (0.514933)
	fat (0.442282)
	lin (0.436808)
	kid (0.389206)
	bla (0.373042)
	rec (0.346141)
	fhi (0.339155)
	vin (0.332557)
	fco (0.314416)
	lnt (0.284616)
	sug (0.254582)
	hea (0.204499)
	fbs (0.175346)
	eye (0.170503)
	tbr (0.154178)
	ctl (0.153069)
	isp (0.150376)
	ski (0.146735)
	spl (0.143184)
	pla (0.133672)
	ute (0.132784)
	thg (0.126791)
	eru (0.120048)
	ebs (0.118301)
	ldo (0.0970026)