Non-Coding RNA Search

Ss1.1-Pig4-TMW8036B07.3

Sequence:


               
               AGAGGCAACTACCATTGAAAGATAGTAAGTGACTGGTTCTAAGACAGCGGAGCCGAGCGC
CGGAGCCCGTGGCTGGCGGGCGTACGGGCCGAAGCCGCCGAGACTAATAATGATCTCCAG
TTGCCAAAGAAAGTTGTGGATGCCAAGAGAAAGGTAACCATTTCTCATCTCCTCGAGTGC
AATTGGCTGCCTCTAAGATCCCACATTGGCTGACAGTAGACATGGCTGAATTTACAAGCT
ACAAGGATACTGCTTCCAGCCGTCACCTGCGGTTTAAGTTACAGAGTCTAAGCCGCCGCC
TTGATGAGCTGGAGGAAGCCACAAAAAACCTCCAGAAAGCAGAGGATGAGCTCCTGGATC
TCCAGGACAAGGTGATTCAGGCAGAAGGCAGCAACTCTAGTATGTTGGCTGAGATTGAAG
TGCTGCGCCAGCGAGTGCTGAGAATTGAAGGCAAAGATGAGGAAATTAAGAGAGCAGAGG
ATCTCTGTCAGCTCATGAAGGAGAAACTTGAAGAGGAGGAAAACCTCACCCGGGAGCTGA
AATCTGAGATTGAGCGGCTTCAGAAACGAATGGCTGAACTGGAGAAACTAGAGGAGGCCT
TCAGCAGGAGTAAGAACGACTGTACTCAACTCTGTTTGAGCCTGAATGAGGAGAGAAACC
TGACAAAGAAAATCTCCTCTGAGCTGGAAATGCTCAGGGTCAAAGTGAAAGAACTGGAAT
CTTCTGAGGACCGGCTGGATAAAACTGAGCAGAGTTTAGTGTCAGAGTTAGAAAAGCTAA
AATCATTAACTCTGAGCTTTGTAAGTGAGAGAAAATACTTGAATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGCAACTACCATTGAAAGATAGTAAGTGACTGGTTCTAAGACAGCGGAGCCGAGCGC
CGGAGCCCGTGGCTGGCGGGCGTACGGGCCGAAGCCGCCGAGACTAATAATGATCTCCAG
TTGCCAAAGAAAGTTGTGGATGCCAAGAGAAAGGTAACCATTTCTCATCTCCTCGAGTGC
AATTGGCTGCCTCTAAGATCCCACATTGGCTGACAGTAGACATGGCTGAATTTACAAGCT
ACAAGGATACTGCTTCCAGCCGTCACCTGCGGTTTAAGTTACAGAGTCTAAGCCGCCGCC
TTGATGAGCTGGAGGAAGCCACAAAAAACCTCCAGAAAGCAGAGGATGAGCTCCTGGATC
TCCAGGACAAGGTGATTCAGGCAGAAGGCAGCAACTCTAGTATGTTGGCTGAGATTGAAG
TGCTGCGCCAGCGAGTGCTGAGAATTGAAGGCAAAGATGAGGAAATTAAGAGAGCAGAGG
ATCTCTGTCAGCTCATGAAGGAGAAACTTGAAGAGGAGGAAAACCTCACCCGGGAGCTGA
AATCTGAGATTGAGCGGCTTCAGAAACGAATGGCTGAACTGGAGAAACTAGAGGAGGCCT
TCAGCAGGAGTAAGAACGACTGTACTCAACTCTGTTTGAGCCTGAATGAGGAGAGAAACC
TGACAAAGAAAATCTCCTCTGAGCTGGAAATGCTCAGGGTCAAAGTGAAAGAACTGGAAT
CTTCTGAGGACCGGCTGGATAAAACTGAGCAGAGTTTAGTGTCAGAGTTAGAAAAGCTAA
AATCATTAACTCTGAGCTTTGTAAGTGAGAGAAAATACTTGAATGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CSL6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CSL6_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               260-419, - strand, RNAz p=0.972583
               

               
               500-779, + strand, RNAz p=0.937276

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-419, - strand, RNAz p=0.972583
               

               
               500-779, + strand, RNAz p=0.937276

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-828, gnl|bosTau2|chr2 (83126120-83126847)
               

               
               101-828, gnl|Hg17|chr1 (23166181-23165454)
               

               
               101-828, gnl|Mm7|chr4 (135918791-135919511)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-828, gnl|bosTau2|chr2 (83126120-83126847)
               

               
               101-828, gnl|Hg17|chr1 (23166181-23165454)
               

               
               101-828, gnl|Mm7|chr4 (135918791-135919511)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	260-419, - strand, RNAz p=0.972583
	500-779, + strand, RNAz p=0.937276

	101-828, gnl\|bosTau2\|chr2 (83126120-83126847)
	101-828, gnl\|Hg17\|chr1 (23166181-23165454)
	101-828, gnl\|Mm7\|chr4 (135918791-135919511)