Ss1.1-Pig4-TMW8036C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGACTACTGGAGCTACAGAGTTAACTCTAAAAGTACTTTTATTGGTTTCTAGAAACTGG AAGAAGAGAAAGGCAAAAAGGAAAAAGAAAGACAGGAAATTGAGAAAGAACGGAGAGAAA GAGAGAGGGAGCGTGAAAGGGAACGAGAAAGGCGAGAACGGGAACGAGAAAGGGAAAGAG AACGTGAACGAGAAAAGGAGAAGGAACGGGAGCGGGAACGAGAACGGGATAGGGATCGTG ACCGGACAAAAGAGAGAGATCGAGATCGGGATCGAGAGAGAGATCGGGACCGAGATCGTG AAAGGAGCTCAGATCGGAATAAGGATCGGAGTCGATCAAGAGAAAAGAGCAGAGATCGTG AAAGGGAACGGGAGAGGGAAAGAGAGAGAGAGAGAGAACGGGAACGAGAAAGAGAACGAG AACGAGAGAGAGAGCGAGAAAGGGAACGAGAACGTGAGAGAGAAAAAGACAAGAAGCGTG ACCGAGAAGAGGATGAAGAAGATGCATATGAACGAAGGAAACTTGAAAGAAAGCTCCGGG AAAAAGAAGCTGCTTATCAGGAGCGCCTTAAGAATTGGGAAATCAGAGAACGAAAGAAAA CCCGGGAGTATGAGAAAGAGGCTGAAAGAGAGGAAGAAAGAAGAAGAGAAATGGCAAAAG AAGCTAAACGACTAAAAGAATTCTTAGAAGATTATGATGATGATAGAGATGATCCCAAAT ATTACAGAGGAAGCGCTCTTCAGAAAAGGTTGCGTGATAGGGAAAAGGAAATGGAAGCAG ATGAACGGGATAGGAAAAGAGAGAAGGAAGAGCTGGAGGAAATCAGGCAGCGCCTTCTAG CAGAAGGGCACCCAGATCCAGATGCAGAGCTCCAGAGGATGGAACAAGAGGCTGAGAGAC GCAGACAGCCGCAAATAAAGCAAGAACCAGAATCAGAGGAAGAGGAAGAAGAAAAGCAAG AAAAGGAAGAAAAACGAGAGGAACCCATGGAAGAAGAAGAAGAACCAGAGCAAAAGCCCT GTCTCAAACCAACACTGAGGCCTATCAGTTCTGCCCCATCTGTTTCCTCTGCCAGTGGCA ATGCAACTCCCAATACTCCTGGGGATGAATCTCCCTGTGGTATTATTATTCCTCATGAAA ATTCACCAGATCAACAACAACCTGAGGAGCATAGGCCAAAAATAGGACTAAGTCTTAAAC TAGGTGCTTCCAATAGTCCTGGTCAACCTAATTCTGTGAAGAGAAAGAAACTCCCCGTAG ATAGTGTCTTTAACAAATTTGAGGATGAAGACAGTGATGATGTACCCCGAAAAAGGAAAC TGGTTCCTTTAGATTATGGTGAAGATGATAAAAACGCTGCCAAAGGCACTGTAAACACTG AAGAAAAGCGCAAACATATTAAGAGTCTCATTGAAAAAATCCCTACAGCCAAACCTGAAC TCTTTGCTTATCCCTTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGACGAATTA GACCATGGATTAATAAAAAGATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTG ATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCTCAGAGCATTTTAGATGATGTTG CCATGGTACTTGATGAAGAAGCAGAAGTTTTTATAGTCAAGATGTGGAGATTGTTGATAT ATGAAACAGAAGCCAAGAAAATTGGTCTTGTGAAGTAAAACTCTTTTTACATTTAGAGTT CCATTTCAGATTTCTTCTTTCCCACCCTTCAAAGGACTTTGAGATTTTTTTTTTGTCTTC AGAGACATTTGTGAGATCTGTAATTTTTTTTTAATGTAGAAAATGTGAATTTTTTTGTCC TCTATAATTTGTTGATGCCCTGTGTACTCTTTTGGTTGTAAAGACATCTGAATCTTATTT TGGTTTTCTTTATACTCACCAGGTACAAATTACTGGTATGTTTTATAAGCCGCAGCTACT GTACACAGCCTATCTGATATAATCTTGTTCTGCTGATTTGTTCTTTGTAAATATTAAAAT GACTCCCCAATTCTTTTGCAGAATTGCACTTAATATTGAACTGTACTGTATAGGCACCAA CATGAACATTTTTAATTGAAAGAATATCAGTCACACCTATTACCCTTACCGCCTTGATCA ACAACAGCAGGCCCTCATGATGGCATGGAATTTAAAATTAGAGTGCGAAAATTAGTAGAC AATCCATTCCTGTATCTCTGTATGGGTGTGTTTGTGTGAGTGTATGTATAAAAGTCTTAC TTTTCCCTAATCGGCTTTGGAGGGTTCCCTTAAACATTTCCTAATTGAAGAATAGAATTG TAAAGGAAACGTGGTATCGTGCCAACCCAAATGTCTGGGATAATTAGGTTATTAGTCTCC CAGAGCATGGTATTCTCTTGTGGCAAGCCAGCAGTCTGTTGAACAGAATGGTTTGCTTTT TTTTCTGTCAATGGCTGTGTCGGCCTCTCTTTTAAGTGAGTGTGAATCATAGTGATATTT CCCCCCCATTTCATTGTTCAGAATGAGGCAGATCCTTAGATTCTGGAGAGCTTTATTTAA TGCATTTTTGCACTAATTGGTCCTTGATTTAATTTTTATGTACCCTTTTGTTTAAAAAAA AATCAAAACTATAAGTGAAAAAAATCCTTTAAAAAAATCAGCAAAAGATAAAAGTAGGCA TTTTTACAAGCTAGGAACATTTGACAAAAAGTACAATAGAAATTCAGCATGGCAATTTAT AGACTTTACATTCTTAATTCTAAGAATAAATTGTTTAAGGCAGTTACCACTATTTGTTCT GTAAAGGGTTTATATCTTGTGTGTGTATATGCAGACACACACCTCGTTTACCTCTGCTCA TCAAAACTTTAAAGATATTGATGGGGATTTCTTTATTGTAGATCAGAACTTCACAAGGGA GCAAAATTACCTGAAAATGTAACAGTTTTAAACAGTTCTTAACAGAAATTAGGTGCAGCT ATTCCTGTGTCCTGAATATTTATTTTTTAAAAAAAGATAAAGATTGGGGGAGCGGTGTTA AAAAAAAAAAGCATAACTGAGTTTGAGTTACTAGATTTTTTTTTTTACATCTTAAGAGGA CAATTGAAAACACTGTTCTTAACATTGGACCATGACATGGTTCCATTATGTAAATATTTC AGATATTAAAAATGTATATATTTGATCTCGGAGACTCATTCTTCCAGAGTCTTGTTAAAT AAATGGCATCATGTTGTAATTGTGTACTGCATACTAGAAACTTAAGTTGAAAATACAGGA GAATTTTTGATGGACTTGATTTTTGAGTATTAGAAGCTGAAAGTAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGACTACTGGAGCTACAGAGTTAACTCTAAAAGTACTTTTATTGGTTTCTAGAAACTGG AAGAAGAGAAAGGCAAAAAGGAAAAAGAAAGACAGGAAATTGAGAAAGAACGGAGAGAAA GAGAGAGGGAGCGTGAAAGGGAACGAGAAAGGCGAGAACGGGAACGAGAAAGGGAAAGAG AACGTGAACGAGAAAAGGAGAAGGAACGGGAGCGGGAACGAGAACGGGATAGGGATCGTG ACCGGACAAAAGAGAGAGATCGAGATCGGGATCGAGAGAGAGATCGGGACCGAGATCGTG AAAGGAGCTCAGATCGGAATAAGGATCGGAGTCGATCAAGAGAAAAGAGCAGAGATCGTG AAAGGGAACGGGAGAGGGAAAGAGAGAGAGAGAGAGAACGGGAACGAGAAAGAGAACGAG AACGAGAGAGAGAGCGAGAAAGGGAACGAGAACGTGAGAGAGAAAAAGACAAGAAGCGTG ACCGAGAAGAGGATGAAGAAGATGCATATGAACGAAGGAAACTTGAAAGAAAGCTCCGGG AAAAAGAAGCTGCTTATCAGGAGCGCCTTAAGAATTGGGAAATCAGAGAACGAAAGAAAA CCCGGGAGTATGAGAAAGAGGCTGAAAGAGAGGAAGAAAGAAGAAGAGAAATGGCAAAAG AAGCTAAACGACTAAAAGAATTCTTAGAAGATTATGATGATGATAGAGATGATCCCAAAT ATTACAGAGGAAGCGCTCTTCAGAAAAGGTTGCGTGATAGGGAAAAGGAAATGGAAGCAG ATGAACGGGATAGGAAAAGAGAGAAGGAAGAGCTGGAGGAAATCAGGCAGCGCCTTCTAG CAGAAGGGCACCCAGATCCAGATGCAGAGCTCCAGAGGATGGAACAAGAGGCTGAGAGAC GCAGACAGCCGCAAATAAAGCAAGAACCAGAATCAGAGGAAGAGGAAGAAGAAAAGCAAG AAAAGGAAGAAAAACGAGAGGAACCCATGGAAGAAGAAGAAGAACCAGAGCAAAAGCCCT GTCTCAAACCAACACTGAGGCCTATCAGTTCTGCCCCATCTGTTTCCTCTGCCAGTGGCA ATGCAACTCCCAATACTCCTGGGGATGAATCTCCCTGTGGTATTATTATTCCTCATGAAA ATTCACCAGATCAACAACAACCTGAGGAGCATAGGCCAAAAATAGGACTAAGTCTTAAAC TAGGTGCTTCCAATAGTCCTGGTCAACCTAATTCTGTGAAGAGAAAGAAACTCCCCGTAG ATAGTGTCTTTAACAAATTTGAGGATGAAGACAGTGATGATGTACCCCGAAAAAGGAAAC TGGTTCCTTTAGATTATGGTGAAGATGATAAAAACGCTGCCAAAGGCACTGTAAACACTG AAGAAAAGCGCAAACATATTAAGAGTCTCATTGAAAAAATCCCTACAGCCAAACCTGAAC TCTTTGCTTATCCCTTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGACGAATTA GACCATGGATTAATAAAAAGATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTG ATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCTCAGAGCATTTTAGATGATGTTG CCATGGTACTTGATGAAGAAGCAGAAGTTTTTATAGTCAAGATGTGGAGATTGTTGATAT ATGAAACAGAAGCCAAGAAAATTGGTCTTGTGAAGTAAAACTCTTTTTACATTTAGAGTT CCATTTCAGATTTCTTCTTTCCCACCCTTCAAAGGACTTTGAGATTTTTTTTTTGTCTTC AGAGACATTTGTGAGATCTGTAATTTTTTTTTAATGTAGAAAATGTGAATTTTTTTGTCC TCTATAATTTGTTGATGCCCTGTGTACTCTTTTGGTTGTAAAGACATCTGAATCTTATTT TGGTTTTCTTTATACTCACCAGGTACAAATTACTGGTATGTTTTATAAGCCGCAGCTACT GTACACAGCCTATCTGATATAATCTTGTTCTGCTGATTTGTTCTTTGTAAATATTAAAAT GACTCCCCAATTCTTTTGCAGAATTGCACTTAATATTGAACTGTACTGTATAGGCACCAA CATGAACATTTTTAATTGAAAGAATATCAGTCACACCTATTACCCTTACCGCCTTGATCA ACAACAGCAGGCCCTCATGATGGCATGGAATTTAAAATTAGAGTGCGAAAATTAGTAGAC AATCCATTCCTGTATCTCTGTATGGGTGTGTTTGTGTGAGTGTATGTATAAAAGTCTTAC TTTTCCCTAATCGGCTTTGGAGGGTTCCCTTAAACATTTCCTAATTGAAGAATAGAATTG TAAAGGAAACGTGGTATCGTGCCAACCCAAATGTCTGGGATAATTAGGTTATTAGTCTCC CAGAGCATGGTATTCTCTTGTGGCAAGCCAGCAGTCTGTTGAACAGAATGGTTTGCTTTT TTTTCTGTCAATGGCTGTGTCGGCCTCTCTTTTAAGTGAGTGTGAATCATAGTGATATTT CCCCCCCATTTCATTGTTCAGAATGAGGCAGATCCTTAGATTCTGGAGAGCTTTATTTAA TGCATTTTTGCACTAATTGGTCCTTGATTTAATTTTTATGTACCCTTTTGTTTAAAAAAA AATCAAAACTATAAGTGAAAAAAATCCTTTAAAAAAATCAGCAAAAGATAAAAGTAGGCA TTTTTACAAGCTAGGAACATTTGACAAAAAGTACAATAGAAATTCAGCATGGCAATTTAT AGACTTTACATTCTTAATTCTAAGAATAAATTGTTTAAGGCAGTTACCACTATTTGTTCT GTAAAGGGTTTATATCTTGTGTGTGTATATGCAGACACACACCTCGTTTACCTCTGCTCA TCAAAACTTTAAAGATATTGATGGGGATTTCTTTATTGTAGATCAGAACTTCACAAGGGA GCAAAATTACCTGAAAATGTAACAGTTTTAAACAGTTCTTAACAGAAATTAGGTGCAGCT ATTCCTGTGTCCTGAATATTTATTTTTTAAAAAAAGATAAAGATTGGGGGAGCGGTGTTA AAAAAAAAAAGCATAACTGAGTTTGAGTTACTAGATTTTTTTTTTTACATCTTAAGAGGA CAATTGAAAACACTGTTCTTAACATTGGACCATGACATGGTTCCATTATGTAAATATTTC AGATATTAAAAATGTATATATTTGATCTCGGAGACTCATTCTTCCAGAGTCTTGTTAAAT AAATGGCATCATGTTGTAATTGTGTACTGCATACTAGAAACTTAAGTTGAAAATACAGGA GAATTTTTGATGGACTTGATTTTTGAGTATTAGAAGCTGAAAGTAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 2-1863, - strand, RNAz p=0.820114 | |
| 957-1076, - strand, RNAz p=0.55412 | |
| 1086-1205, - strand, RNAz p=0.658521 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-1863, - strand, RNAz p=0.820114 | |
| 957-1076, - strand, RNAz p=0.55412 | |
| 1086-1205, - strand, RNAz p=0.658521 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-340, gnl|bosTau2|chr10 (59611732-59612070) | |
| 2-340, gnl|Hg17|chr14 (72639601-72639939) | |
| 2-340, gnl|Mm7|chr12 (81659964-81660296) | |
| 878-1205, gnl|bosTau2|chr10 (59620815-59621142) | |
| 878-1205, gnl|Hg17|chr14 (72647291-72647618) | |
| 878-1205, gnl|Mm7|chr12 (81670375-81670702) | |
| 1479-1581, gnl|bosTau2|chr10 (59622350-59622452) | |
| 1479-1581, gnl|canFam2|chr8 (49515227-49515355) | |
| 1479-1581, gnl|danRer3|chr1 (30717778-30717898) | |
| 1479-1581, gnl|dasNov1|scaffold_10537 (40588-40460) | |
| 1479-1581, gnl|echTel1|scaffold_294999 (40145-40273) | |
| 1479-1581, gnl|fr1|chrUn (228411277-228411397) | |
| 1479-1581, gnl|galGal2|chr5 (23651098-23650968) | |
| 1479-1581, gnl|hg17|chr14 (72648591-72648719) | |
| 1479-1581, gnl|Hg17|chr14 (72648613-72648715) | |
| 1479-1581, gnl|loxAfr1|scaffold_47866 (12606-12734) | |
| 1479-1581, gnl|mm7|chr12 (81672097-81672225) | |
| 1479-1581, gnl|Mm7|chr12 (81672119-81672221) | |
| 1479-1581, gnl|monDom2|scaffold_8 (62138794-62138662) | |
| 1479-1581, gnl|oryCun1|scaffold_183776 (15445-15321) | |
| 1479-1581, gnl|panTro1|chr15 (72428350-72428478) | |
| 1479-1581, gnl|rheMac2|chr7 (136229169-136229297) | |
| 1479-1581, gnl|rn3|chr6 (107719209-107719337) | |
| 1479-1581, gnl|tetNig1|chr14 (2294471-2294583) | |
| 1479-1581, gnl|xenTro1|scaffold_218 (1687463-1687596) | |
| 1625-2884, gnl|bosTau2|chr10 (59626556-59627820) | |
| 1625-2884, gnl|Hg17|chr14 (72656173-72657434) | |
| 1625-2884, gnl|Mm7|chr12 (81677539-81678779) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-340, gnl|bosTau2|chr10 (59611732-59612070) | |
| 2-340, gnl|Hg17|chr14 (72639601-72639939) | |
| 2-340, gnl|Mm7|chr12 (81659964-81660296) | |
| 878-1205, gnl|bosTau2|chr10 (59620815-59621142) | |
| 878-1205, gnl|Hg17|chr14 (72647291-72647618) | |
| 878-1205, gnl|Mm7|chr12 (81670375-81670702) | |
| 1479-1581, gnl|bosTau2|chr10 (59622350-59622452) | |
| 1479-1581, gnl|canFam2|chr8 (49515227-49515355) | |
| 1479-1581, gnl|danRer3|chr1 (30717778-30717898) | |
| 1479-1581, gnl|dasNov1|scaffold_10537 (40588-40460) | |
| 1479-1581, gnl|echTel1|scaffold_294999 (40145-40273) | |
| 1479-1581, gnl|fr1|chrUn (228411277-228411397) | |
| 1479-1581, gnl|galGal2|chr5 (23651098-23650968) | |
| 1479-1581, gnl|hg17|chr14 (72648591-72648719) | |
| 1479-1581, gnl|Hg17|chr14 (72648613-72648715) | |
| 1479-1581, gnl|loxAfr1|scaffold_47866 (12606-12734) | |
| 1479-1581, gnl|mm7|chr12 (81672097-81672225) | |
| 1479-1581, gnl|Mm7|chr12 (81672119-81672221) | |
| 1479-1581, gnl|monDom2|scaffold_8 (62138794-62138662) | |
| 1479-1581, gnl|oryCun1|scaffold_183776 (15445-15321) | |
| 1479-1581, gnl|panTro1|chr15 (72428350-72428478) | |
| 1479-1581, gnl|rheMac2|chr7 (136229169-136229297) | |
| 1479-1581, gnl|rn3|chr6 (107719209-107719337) | |
| 1479-1581, gnl|tetNig1|chr14 (2294471-2294583) | |
| 1479-1581, gnl|xenTro1|scaffold_218 (1687463-1687596) | |
| 1625-2884, gnl|bosTau2|chr10 (59626556-59627820) | |
| 1625-2884, gnl|Hg17|chr14 (72656173-72657434) | |
| 1625-2884, gnl|Mm7|chr12 (81677539-81678779) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| fce (0.543183) | |
| cbl (0.45919) | |
| thg (0.380373) | |
| lun (0.300978) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| spl (0.286369) | |
| csk (0.281492) | |
| kid (0.259471) | |
| eep (0.245128) | |
| tes (0.207814) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| cbl (0.45919) | |
| thg (0.380373) | |
| lun (0.300978) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| spl (0.286369) | |
| csk (0.281492) | |
| kid (0.259471) | |
| eep (0.245128) | |
| tes (0.207814) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |