Non-Coding RNA Search

Ss1.1-Pig4-TMW8036C09.5

Sequence:


               
               CAGCGCAGCCAGCCCCGGCGGCACCAGGTCACGGCGGGAATTCTCGGGGGTCTCGGGCTC
GAGGCCGCCCCATCTGCGGCGTGACGGGCGGCCCAGATGGTCACCATGGGCCAGTGCTAC
TACAATGAGACCATCGGCTTCTTCTATAACAACAGCGGCAAAGAGCTCAGCTCCCACTGG
CGGCCTAAAGATGTGGTTGTGGTGGCACTGGGGCTGACTGTCAGTGTGCTGGTTCTGCTG
ACCAACCTGCTAGTCATCGCAGCCATCGCCTCCAACCGCCGTTTCCACCAGCCTATTTAC
TACCTGCTGGGCAACCTGGCTGCAGCCGACCTCTTTGCAGGTGTAGCCTACCTCTTCCTC
ATGTTCCACACAGGCCCACGCACAGCCCGGCTCTCACTTCAGGGCTGGTTCTTGCGGCAG
GGCCTGTTGGATACAAGCCTGACGGCATCTGTGGCTACACTTCTGGCCATTGCTGTGGAG
CGTCACCGAAGTGTGATGGCCGTGCAGCTGCATAGCCGCCTACCACGAGGCCGGGTCATC
ATGCTCATCGTGGGCGTGTGGGTGGCTGCGCTGGGCCTAGGGCTGCTGCCTGCCCACTCC
TGGCACTGCCTCTGTGCCCTGGACCGCTGCTCACGCATGGCCCCCCTGCTCAGCCGCTCC
TACCTGGCCGTCTGGGCCCTGTCCAGCTTGCTTGTCTTCCTGCTCATGGTGGCTGTCTAC
ACTCGCATTTTCTTCTATGTGAGGCGGCGGGTGCAGCGCATGGCAGAGCATGTCAGCTGC
CATCCCCGCTACCGTGAAACCACACTCACCCTGGTCAAGACTGTTGTCATCATTCTGGGA
GCATTCGTCATCTGCTGGACGCCAGGCCAGGTTGTGCTTCTCCTGGATGGTCTGGGCTGC
AAGTCTTGCAACGTCTTGGCTGTGGAGAAGTATTTCCTACTCTTAGCAGAGGCCAACTCA
CTGGTCAACGCCGTGGTGTACTCATGCCGTGATGCTGAGATGCGCCGCACCTTCCGCCGC
CTCCTCTGCTGTCTGTGCCTCCGCCAGTCTGACCACAAGTCTGTTCGCTACACACCCTCC
ACCCAGACAGGCACAAGCACTCGCATCATGCTTCCTGAGAATGGCCATCCCCTGATGGAC
TCCACCCTTTAGCTAACCTTGGACTTCGGCAGGATAGAGCAAATGCCAGATCGCTGCCCC
TGGCCACCTGTGGCTGCACCTGGCTCTACCCAATCTGCAGGCCAGACTTAAGGCAGACCC
TCAGTCTGACATGGCACGAAACCACTGCCTGTCCCACCCAGACCCGCAACTGGGCCTGTC
TTAGGCCTAGAGATTGGAGTCATGTAAGCACCCAGGAAAGAGTTGAATGGGTGCAGGAAT
ATGGCCCTTCAGTCATCTCAGGCTGTAGGGCTTTTTAACAGACACTTTTCTGTTTTTACC
ACACATCCCTGGTAAACTCTGTGGACTGCTTCCTTGTCCATGGTGGTGCGGGTAATAAAG
GTGGGAGAGATGAGGACTCTCCCAGGCCACGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCAGCCAGCCCCGGCGGCACCAGGTCACGGCGGGAATTCTCGGGGGTCTCGGGCTC
GAGGCCGCCCCATCTGCGGCGTGACGGGCGGCCCAGATGGTCACCATGGGCCAGTGCTAC
TACAATGAGACCATCGGCTTCTTCTATAACAACAGCGGCAAAGAGCTCAGCTCCCACTGG
CGGCCTAAAGATGTGGTTGTGGTGGCACTGGGGCTGACTGTCAGTGTGCTGGTTCTGCTG
ACCAACCTGCTAGTCATCGCAGCCATCGCCTCCAACCGCCGTTTCCACCAGCCTATTTAC
TACCTGCTGGGCAACCTGGCTGCAGCCGACCTCTTTGCAGGTGTAGCCTACCTCTTCCTC
ATGTTCCACACAGGCCCACGCACAGCCCGGCTCTCACTTCAGGGCTGGTTCTTGCGGCAG
GGCCTGTTGGATACAAGCCTGACGGCATCTGTGGCTACACTTCTGGCCATTGCTGTGGAG
CGTCACCGAAGTGTGATGGCCGTGCAGCTGCATAGCCGCCTACCACGAGGCCGGGTCATC
ATGCTCATCGTGGGCGTGTGGGTGGCTGCGCTGGGCCTAGGGCTGCTGCCTGCCCACTCC
TGGCACTGCCTCTGTGCCCTGGACCGCTGCTCACGCATGGCCCCCCTGCTCAGCCGCTCC
TACCTGGCCGTCTGGGCCCTGTCCAGCTTGCTTGTCTTCCTGCTCATGGTGGCTGTCTAC
ACTCGCATTTTCTTCTATGTGAGGCGGCGGGTGCAGCGCATGGCAGAGCATGTCAGCTGC
CATCCCCGCTACCGTGAAACCACACTCACCCTGGTCAAGACTGTTGTCATCATTCTGGGA
GCATTCGTCATCTGCTGGACGCCAGGCCAGGTTGTGCTTCTCCTGGATGGTCTGGGCTGC
AAGTCTTGCAACGTCTTGGCTGTGGAGAAGTATTTCCTACTCTTAGCAGAGGCCAACTCA
CTGGTCAACGCCGTGGTGTACTCATGCCGTGATGCTGAGATGCGCCGCACCTTCCGCCGC
CTCCTCTGCTGTCTGTGCCTCCGCCAGTCTGACCACAAGTCTGTTCGCTACACACCCTCC
ACCCAGACAGGCACAAGCACTCGCATCATGCTTCCTGAGAATGGCCATCCCCTGATGGAC
TCCACCCTTTAGCTAACCTTGGACTTCGGCAGGATAGAGCAAATGCCAGATCGCTGCCCC
TGGCCACCTGTGGCTGCACCTGGCTCTACCCAATCTGCAGGCCAGACTTAAGGCAGACCC
TCAGTCTGACATGGCACGAAACCACTGCCTGTCCCACCCAGACCCGCAACTGGGCCTGTC
TTAGGCCTAGAGATTGGAGTCATGTAAGCACCCAGGAAAGAGTTGAATGGGTGCAGGAAT
ATGGCCCTTCAGTCATCTCAGGCTGTAGGGCTTTTTAACAGACACTTTTCTGTTTTTACC
ACACATCCCTGGTAAACTCTGTGGACTGCTTCCTTGTCCATGGTGGTGCGGGTAATAAAG
GTGGGAGAGATGAGGACTCTCCCAGGCCACGCTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               EDG4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               EDG4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               92-650, - strand, RNAz p=0.954772

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-650, - strand, RNAz p=0.954772

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               92-903, gnl|bosTau2|chr7 (3850497-3851307)
               

               
               92-903, gnl|Hg17|chr19 (19599098-19598352)
               

               
               92-903, gnl|Mm7|chr8 (68278220-68278966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-903, gnl|bosTau2|chr7 (3850497-3851307)
               

               
               92-903, gnl|Hg17|chr19 (19599098-19598352)
               

               
               92-903, gnl|Mm7|chr8 (68278220-68278966)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	92-903, gnl\|bosTau2\|chr7 (3850497-3851307)
	92-903, gnl\|Hg17\|chr19 (19599098-19598352)
	92-903, gnl\|Mm7\|chr8 (68278220-68278966)