Non-Coding RNA Search

Ss1.1-Pig4-TMW8036C11.5

Sequence:


               
               CGAGCGGCGCCGGCGTCATGTGACTGCCCGGAGTTGGTGCCAGGAGCCAGAGGGGAGCCA
GGAGCGGAGCCGCGCGGAGCCGGGGCCCGAGCCGGAGCGCAGCGCGAGCGCCCGCCGAGC
TGTGCCGCGCCCGCCGCACGCGCGCCAGTCCCCGTCCCGGTCCCCTGCGGCCGCCAGAGC
CAACGCCGCCAGGACTGGAGCGCTGACACCACTGCATCCGCGGGGCTCCAGGGAGCCCAG
GTCTGGGCCTTTATTTCTCGCCTGCAGCGCTCAGCACCGCGCCTCGAAAAGCCAAACACC
CGAGCACCCTAGAAAGCATAATTAAAAGAATGCTCATGTTTGACCCAGTCCCTGTCAAGC
AAGAGGCCATGGACCCTGTCTCGGTGTCCTACCCGTCGAGTTACATGGAGTCAATAAAGC
CCAACAAGTACGGCGTCATCTACTCCACCCCGTTACCGGATAAGTTCTTCCAGACCCCGG
AAGGCCTGTCGCACGGGATGCAGATGGAGCCGGTGGACCTCACGGTGAACAAGCGCAGCT
CCCCGCCCTCGGCCGGGGGCTCCCCCTCCTCCCTGAAGTTCCAGGCCCCGCACCGGAGAG
CCTCGCCCGGGCTGAGCCTGCCCTCGTCCAGCCCGCCCGCCAAGAAGTACTCGCCGCCGC
CGCCCCCCGGCGTGCAGCCCTTCAGCGTGCCGCTGTCCATGCCCCCCGTGATGGCCGCGG
CCCTGTCCCGGCACGGCGGCATCCGCAGCCCGGGCATCCTGCCGGTCATCCAGCCCGTCG
TGGTGCAGCCCGTCCCCTTCATGTACACCAGCCACCTCCAGCAGCCTCTCATGGTCTCCT
TGTCGGAGGAGATGGAGAATTCCAGCAGTAGCATGCAAGTACCTGTAATTGAATCATATG
AGAAGCCTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCGGCGCCGGCGTCATGTGACTGCCCGGAGTTGGTGCCAGGAGCCAGAGGGGAGCCA
GGAGCGGAGCCGCGCGGAGCCGGGGCCCGAGCCGGAGCGCAGCGCGAGCGCCCGCCGAGC
TGTGCCGCGCCCGCCGCACGCGCGCCAGTCCCCGTCCCGGTCCCCTGCGGCCGCCAGAGC
CAACGCCGCCAGGACTGGAGCGCTGACACCACTGCATCCGCGGGGCTCCAGGGAGCCCAG
GTCTGGGCCTTTATTTCTCGCCTGCAGCGCTCAGCACCGCGCCTCGAAAAGCCAAACACC
CGAGCACCCTAGAAAGCATAATTAAAAGAATGCTCATGTTTGACCCAGTCCCTGTCAAGC
AAGAGGCCATGGACCCTGTCTCGGTGTCCTACCCGTCGAGTTACATGGAGTCAATAAAGC
CCAACAAGTACGGCGTCATCTACTCCACCCCGTTACCGGATAAGTTCTTCCAGACCCCGG
AAGGCCTGTCGCACGGGATGCAGATGGAGCCGGTGGACCTCACGGTGAACAAGCGCAGCT
CCCCGCCCTCGGCCGGGGGCTCCCCCTCCTCCCTGAAGTTCCAGGCCCCGCACCGGAGAG
CCTCGCCCGGGCTGAGCCTGCCCTCGTCCAGCCCGCCCGCCAAGAAGTACTCGCCGCCGC
CGCCCCCCGGCGTGCAGCCCTTCAGCGTGCCGCTGTCCATGCCCCCCGTGATGGCCGCGG
CCCTGTCCCGGCACGGCGGCATCCGCAGCCCGGGCATCCTGCCGGTCATCCAGCCCGTCG
TGGTGCAGCCCGTCCCCTTCATGTACACCAGCCACCTCCAGCAGCCTCTCATGGTCTCCT
TGTCGGAGGAGATGGAGAATTCCAGCAGTAGCATGCAAGTACCTGTAATTGAATCATATG
AGAAGCCTATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57833897|emb|CAH17796.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57833897|emb|CAH17796.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-479, - strand, RNAz p=0.916281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-479, - strand, RNAz p=0.916281

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-912, gnl|bosTau2|chr1 (64897924-64898820)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr1 (64897924-64898820)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)