Non-Coding RNA Search

Ss1.1-Pig4-TMW8036D01.5

Sequence:


               
               TGGCGTCCCTTCTCCAGGTGTTGCGGCGCTTCCACGTCGCCAGGCGGTCCGCGGCTTGCG
TGAGCCCAGGCCGCCCCAGCGTCCAGAGTGCCGGCCCTTGGGCTCCCGAGGCCATGGCGG
GGCCGGGCCCTGGGGACCCGGACGAGCAGTACGATTTCCTGTTCAAGCTGGTGCTGGTGG
GCGACGCGAGCGTAGGCAAGACGTGCGTAGTGCAGCGCTTCAAGACCGGCGCCTTCTCGG
AGCGCCAGGGCAGCACCATCGGCGTGGACTTCACCATGAAGACGCTGGAGATCCAGGGCC
AGCGGGTCAAGCTGCAGATCTGGGACACAGCTGGCCAGGAGCGATTCCGCACCATCACGC
AGAGCTACTACCGCAGCGCCAATGGGGCCATCCTGGCCTACGACATCACCAAGAAGAGCT
CCTTCCTGTCAGTGCCTCACTGGATTGAGGACGTGAGGAAGTATGCCGGCTCCAACATTG
TGCAGCTGCTGATTGGGAACAAGTCGGACCTCAGCGAGCTGCGGGAAGTGCCGCTAGCCG
AGGCACAGAGCCTGGCAGAGCACTATGACATCCTGTGCGCCATCGAGACGTCGGCCAAGG
ACTCAAGCAACGTGGAGGAGGCCTTCGTGAGGGTGGCCACGGAGCTGGTCATGAGGCATG
GGGGCCCTCTGCTCAGCGAGAAGGGCACTGACCATATCCAGCTGGACAGCAAGGATGTCG
GAGAGACCTGGGGCTGTGGGTGCTGACCGGGCGCAGGGCAGGCAGGCGGGGCCCCACCTG
CTCTTGCCCTCTGGCCTCTACGCCCAGCCCCCCAGAGCTGGCCCTCCAGGGCACCAGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGTCCCTTCTCCAGGTGTTGCGGCGCTTCCACGTCGCCAGGCGGTCCGCGGCTTGCG
TGAGCCCAGGCCGCCCCAGCGTCCAGAGTGCCGGCCCTTGGGCTCCCGAGGCCATGGCGG
GGCCGGGCCCTGGGGACCCGGACGAGCAGTACGATTTCCTGTTCAAGCTGGTGCTGGTGG
GCGACGCGAGCGTAGGCAAGACGTGCGTAGTGCAGCGCTTCAAGACCGGCGCCTTCTCGG
AGCGCCAGGGCAGCACCATCGGCGTGGACTTCACCATGAAGACGCTGGAGATCCAGGGCC
AGCGGGTCAAGCTGCAGATCTGGGACACAGCTGGCCAGGAGCGATTCCGCACCATCACGC
AGAGCTACTACCGCAGCGCCAATGGGGCCATCCTGGCCTACGACATCACCAAGAAGAGCT
CCTTCCTGTCAGTGCCTCACTGGATTGAGGACGTGAGGAAGTATGCCGGCTCCAACATTG
TGCAGCTGCTGATTGGGAACAAGTCGGACCTCAGCGAGCTGCGGGAAGTGCCGCTAGCCG
AGGCACAGAGCCTGGCAGAGCACTATGACATCCTGTGCGCCATCGAGACGTCGGCCAAGG
ACTCAAGCAACGTGGAGGAGGCCTTCGTGAGGGTGGCCACGGAGCTGGTCATGAGGCATG
GGGGCCCTCTGCTCAGCGAGAAGGGCACTGACCATATCCAGCTGGACAGCAAGGATGTCG
GAGAGACCTGGGGCTGTGGGTGCTGACCGGGCGCAGGGCAGGCAGGCGGGGCCCCACCTG
CTCTTGCCCTCTGGCCTCTACGCCCAGCCCCCCAGAGCTGGCCCTCCAGGGCACCAGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52789391|gb|AAH82988.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52789391|gb|AAH82988.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               495-754, gnl|bosTau2|chr22 (47639314-47639055)
               

               
               495-754, gnl|Hg17|chr3 (130292888-130292629)
               

               
               495-754, gnl|Mm7|chr6 (87867934-87867682)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               495-754, gnl|bosTau2|chr22 (47639314-47639055)
               

               
               495-754, gnl|Hg17|chr3 (130292888-130292629)
               

               
               495-754, gnl|Mm7|chr6 (87867934-87867682)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               clu (0.119646)

	495-754, gnl\|bosTau2\|chr22 (47639314-47639055)
	495-754, gnl\|Hg17\|chr3 (130292888-130292629)
	495-754, gnl\|Mm7\|chr6 (87867934-87867682)