Ss1.1-Pig4-TMW8036D03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTAACCACCCTGTGTTTAGCCAGCTGTGTGAACAAGCTATGAGAGAAGCCAAGATCATG CACTACGACGACCTCCTGTTCAGTCTTCATGCCATAGTGAAGCTCGGGATTCCTCAGAAC ACGCTACTCGTACAGACTTTGCTGAGGGTGGTCCAGGAACGTATCAACGAGTGTGATGAG AAGTGTCTTTCAGTTTTGTCAACTGTCTTAGAGGCAATGGAGCCATGCAAGAATGTGGAT GTTCTTCGAGCGGGATTTCGGATGCTAGTTGATCAGCAAGTTTGGAAAATAGAACGTGTC TTCACATTACAAACTGTAATGAAATGTATTGGAAAAGATGCACCAGTTGGTCTTAAAAGG AAATTGGAGATGAAAGCCTTGAAGGAATTAGACCAGTTTTCTGTTTTGAATAGCCAGCAC ATGTTTAAGGTACTTGCTGCCATGAATCACCGTTCCATTATCCTTCTGAACGAATGCAGT AAGACAGTCACAAGTAATATCCATGGGTGTCCTTTTAAAATATTGATCAGTATATTGCAG TCTTGCAGAGACCTCCGATACTTTAATATAGATCTTTTGAAGGGAATAGCAGATTATGTG ACTACAACTTTTGACATCTGGAAGTTGAAGCAAGTTCTTTTTCTCCTCATTTTATTTGAA AGCTTTGGCTTTCGGCCTGTTGGTTTGATGGACTTGTTTATGAAGAAAGCAGCAGATGAA TCTGGCTCCCTGAACGTGAAAAACCTTGTCTGTATTCTTTATGTGTATTCTTCTCTCAAT CACGTCTATAAATGCCAGACCCACAGGTTCCTAGAAATTATGGCAACTGCTCTGACGGGC AGTCTTCACCACATTTCTTCAGAAAACCTGTTGAACGTTGTGTGTTCGTTTTGCTTGTTG AACCATTTTCCCCTGGCCCTTATTAATCAGCTTTTCCAAAAGGACACCATCAGTGATCTG CTGACCTCAGGTGATGTGGAGAAGCATGTTCTCAAGCTTTGTACGGTGACTGCTTGTCTA AAACTTGATGATGCTCCTTATCCCAAGAACATAGACCTAGTGCTGCCAGAGCCGCCATCC ACAGTGCTGTGCCCTAATGCAAAGGTTGCCAAGGTGCTGAGTAGCCTCCTGGGAGAAGGA TGCTTCTCCAAAAGTGTACAGTTGCCACATAATTATTATATCGATTTTGAAATCAGAATG GATACTAACAGGAGCCAAGTGCTTCCATTTTCTGAGGTGGACGTGGTAACTTCTGATACA GATATTCAAAGAGTAGCCATACTATGTATTCCTAAGTCTGCTTACTGTTTGGATTCAACC CACCCCAAAGGAAACCTTGCTTTGAAAATGCGGCATTTGAAAGCAATGGGTTTTCGTGTG ATCTTGGTCCATAATTGGGAGATGGAAAAACTAGACATGAAGGATGCAGTCATGCTTTTG AAGACTAAAATCTATTCAACTGAAGCACTTGCTCCTGCTGATAAAAATTTGCAAAGCACA TGTTAAAAGTAAAAAGCAGCCCTTTTATATTAGGAGACATAAGTTTGTAAAAATAACTTT AATAAAGACTACAATTTAGTTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTAACCACCCTGTGTTTAGCCAGCTGTGTGAACAAGCTATGAGAGAAGCCAAGATCATG CACTACGACGACCTCCTGTTCAGTCTTCATGCCATAGTGAAGCTCGGGATTCCTCAGAAC ACGCTACTCGTACAGACTTTGCTGAGGGTGGTCCAGGAACGTATCAACGAGTGTGATGAG AAGTGTCTTTCAGTTTTGTCAACTGTCTTAGAGGCAATGGAGCCATGCAAGAATGTGGAT GTTCTTCGAGCGGGATTTCGGATGCTAGTTGATCAGCAAGTTTGGAAAATAGAACGTGTC TTCACATTACAAACTGTAATGAAATGTATTGGAAAAGATGCACCAGTTGGTCTTAAAAGG AAATTGGAGATGAAAGCCTTGAAGGAATTAGACCAGTTTTCTGTTTTGAATAGCCAGCAC ATGTTTAAGGTACTTGCTGCCATGAATCACCGTTCCATTATCCTTCTGAACGAATGCAGT AAGACAGTCACAAGTAATATCCATGGGTGTCCTTTTAAAATATTGATCAGTATATTGCAG TCTTGCAGAGACCTCCGATACTTTAATATAGATCTTTTGAAGGGAATAGCAGATTATGTG ACTACAACTTTTGACATCTGGAAGTTGAAGCAAGTTCTTTTTCTCCTCATTTTATTTGAA AGCTTTGGCTTTCGGCCTGTTGGTTTGATGGACTTGTTTATGAAGAAAGCAGCAGATGAA TCTGGCTCCCTGAACGTGAAAAACCTTGTCTGTATTCTTTATGTGTATTCTTCTCTCAAT CACGTCTATAAATGCCAGACCCACAGGTTCCTAGAAATTATGGCAACTGCTCTGACGGGC AGTCTTCACCACATTTCTTCAGAAAACCTGTTGAACGTTGTGTGTTCGTTTTGCTTGTTG AACCATTTTCCCCTGGCCCTTATTAATCAGCTTTTCCAAAAGGACACCATCAGTGATCTG CTGACCTCAGGTGATGTGGAGAAGCATGTTCTCAAGCTTTGTACGGTGACTGCTTGTCTA AAACTTGATGATGCTCCTTATCCCAAGAACATAGACCTAGTGCTGCCAGAGCCGCCATCC ACAGTGCTGTGCCCTAATGCAAAGGTTGCCAAGGTGCTGAGTAGCCTCCTGGGAGAAGGA TGCTTCTCCAAAAGTGTACAGTTGCCACATAATTATTATATCGATTTTGAAATCAGAATG GATACTAACAGGAGCCAAGTGCTTCCATTTTCTGAGGTGGACGTGGTAACTTCTGATACA GATATTCAAAGAGTAGCCATACTATGTATTCCTAAGTCTGCTTACTGTTTGGATTCAACC CACCCCAAAGGAAACCTTGCTTTGAAAATGCGGCATTTGAAAGCAATGGGTTTTCGTGTG ATCTTGGTCCATAATTGGGAGATGGAAAAACTAGACATGAAGGATGCAGTCATGCTTTTG AAGACTAAAATCTATTCAACTGAAGCACTTGCTCCTGCTGATAAAAATTTGCAAAGCACA TGTTAAAAGTAAAAAGCAGCCCTTTTATATTAGGAGACATAAGTTTGTAAAAATAACTTT AATAAAGACTACAATTTAGTTGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr2 (58225103-58224947) | |
| 1-157, gnl|canFam2|chr37 (18288614-18288864) | |
| 1-157, gnl|danRer3|chr1 (1009067-1009317) | |
| 1-157, gnl|echTel1|scaffold_308344 (53152-53400) | |
| 1-157, gnl|fr1|chrUn (218443589-218443845) | |
| 1-157, gnl|galGal2|chr7 (13278674-13278433) | |
| 1-157, gnl|hg17|chr2 (207457396-207457646) | |
| 1-157, gnl|Hg17|chr2 (207457545-207457701) | |
| 1-157, gnl|mm7|chr1 (63972579-63972829) | |
| 1-157, gnl|Mm7|chr1 (63972728-63972884) | |
| 1-157, gnl|monDom2|scaffold_39 (16476170-16475920) | |
| 1-157, gnl|oryCun1|scaffold_173538 (42186-41936) | |
| 1-157, gnl|panTro1|chr13 (97490507-97490757) | |
| 1-157, gnl|rheMac2|chr12 (70669412-70669662) | |
| 1-157, gnl|rn3|chr9 (62567400-62567650) | |
| 1-157, gnl|tetNig1|chr3 (6224341-6224582) | |
| 1-157, gnl|xenTro1|scaffold_240 (1536353-1536088) | |
| 368-497, gnl|bosTau2|chr2 (58220641-58220512) | |
| 368-497, gnl|Hg17|chr2 (207462122-207462251) | |
| 368-497, gnl|Mm7|chr1 (63976505-63976634) | |
| 634-804, gnl|bosTau2|chr2 (58219029-58218859) | |
| 634-804, gnl|canFam2|chr37 (18294037-18294245) | |
| 634-804, gnl|danRer3|chr1 (1016622-1016836) | |
| 634-804, gnl|dasNov1|scaffold_14324 (66498-66709) | |
| 634-804, gnl|echTel1|scaffold_308344 (61051-61256) | |
| 634-804, gnl|fr1|chrUn (218445128-218445333) | |
| 634-804, gnl|galGal2|chr7 (13273240-13273037) | |
| 634-804, gnl|hg17|chr2 (207464439-207464644) | |
| 634-804, gnl|Hg17|chr2 (207464455-207464625) | |
| 634-804, gnl|loxAfr1|scaffold_11125 (42899-43104) | |
| 634-804, gnl|mm7|chr1 (63979827-63980030) | |
| 634-804, gnl|Mm7|chr1 (63979844-63980014) | |
| 634-804, gnl|monDom2|scaffold_39 (16462423-16462195) | |
| 634-804, gnl|oryCun1|scaffold_174564 (52599-52393) | |
| 634-804, gnl|panTro1|chr13 (97497652-97497858) | |
| 634-804, gnl|rheMac2|chr12 (70676022-70676230) | |
| 634-804, gnl|rn3|chr9 (62572563-62572766) | |
| 634-804, gnl|tetNig1|chr3 (6225818-6226016) | |
| 805-972, gnl|bosTau2|chr2 (58213850-58213683) | |
| 805-972, gnl|canFam2|chr37 (18297983-18298258) | |
| 805-972, gnl|dasNov1|scaffold_14324 (70443-70719) | |
| 805-972, gnl|hg17|chr2 (207476918-207477168) | |
| 805-972, gnl|Hg17|chr2 (207476964-207477131) | |
| 805-972, gnl|loxAfr1|scaffold_11125 (48251-48492) | |
| 805-972, gnl|mm7|chr1 (63986421-63986677) | |
| 805-972, gnl|Mm7|chr1 (63986502-63986669) | |
| 805-972, gnl|monDom2|scaffold_39 (16456634-16456382) | |
| 805-972, gnl|oryCun1|scaffold_201185 (61626-61382) | |
| 805-972, gnl|rheMac2|chr12 (70686388-70686629) | |
| 805-972, gnl|rn3|chr9 (62578700-62578955) | |
| 1386-1582, gnl|bosTau2|chr2 (58207300-58207105) | |
| 1386-1582, gnl|canFam2|chr37 (18302296-18302702) | |
| 1386-1582, gnl|dasNov1|scaffold_14324 (75532-75937) | |
| 1386-1582, gnl|echTel1|scaffold_215581 (116-514) | |
| 1386-1582, gnl|hg17|chr2 (207481663-207482063) | |
| 1386-1582, gnl|Hg17|chr2 (207481912-207482102) | |
| 1386-1582, gnl|loxAfr1|scaffold_11125 (52883-53269) | |
| 1386-1582, gnl|mm7|chr1 (63992744-63993085) | |
| 1386-1582, gnl|Mm7|chr1 (63992958-63993128) | |
| 1386-1582, gnl|monDom2|scaffold_39 (16446249-16445870) | |
| 1386-1582, gnl|oryCun1|scaffold_201185 (56600-56218) | |
| 1386-1582, gnl|panTro1|chr13 (97515187-97515587) | |
| 1386-1582, gnl|rheMac2|chr12 (70691096-70691491) | |
| 1386-1582, gnl|rn3|chr9 (62585185-62585541) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr2 (58225103-58224947) | |
| 1-157, gnl|canFam2|chr37 (18288614-18288864) | |
| 1-157, gnl|danRer3|chr1 (1009067-1009317) | |
| 1-157, gnl|echTel1|scaffold_308344 (53152-53400) | |
| 1-157, gnl|fr1|chrUn (218443589-218443845) | |
| 1-157, gnl|galGal2|chr7 (13278674-13278433) | |
| 1-157, gnl|hg17|chr2 (207457396-207457646) | |
| 1-157, gnl|Hg17|chr2 (207457545-207457701) | |
| 1-157, gnl|mm7|chr1 (63972579-63972829) | |
| 1-157, gnl|Mm7|chr1 (63972728-63972884) | |
| 1-157, gnl|monDom2|scaffold_39 (16476170-16475920) | |
| 1-157, gnl|oryCun1|scaffold_173538 (42186-41936) | |
| 1-157, gnl|panTro1|chr13 (97490507-97490757) | |
| 1-157, gnl|rheMac2|chr12 (70669412-70669662) | |
| 1-157, gnl|rn3|chr9 (62567400-62567650) | |
| 1-157, gnl|tetNig1|chr3 (6224341-6224582) | |
| 1-157, gnl|xenTro1|scaffold_240 (1536353-1536088) | |
| 368-497, gnl|bosTau2|chr2 (58220641-58220512) | |
| 368-497, gnl|Hg17|chr2 (207462122-207462251) | |
| 368-497, gnl|Mm7|chr1 (63976505-63976634) | |
| 634-804, gnl|bosTau2|chr2 (58219029-58218859) | |
| 634-804, gnl|canFam2|chr37 (18294037-18294245) | |
| 634-804, gnl|danRer3|chr1 (1016622-1016836) | |
| 634-804, gnl|dasNov1|scaffold_14324 (66498-66709) | |
| 634-804, gnl|echTel1|scaffold_308344 (61051-61256) | |
| 634-804, gnl|fr1|chrUn (218445128-218445333) | |
| 634-804, gnl|galGal2|chr7 (13273240-13273037) | |
| 634-804, gnl|hg17|chr2 (207464439-207464644) | |
| 634-804, gnl|Hg17|chr2 (207464455-207464625) | |
| 634-804, gnl|loxAfr1|scaffold_11125 (42899-43104) | |
| 634-804, gnl|mm7|chr1 (63979827-63980030) | |
| 634-804, gnl|Mm7|chr1 (63979844-63980014) | |
| 634-804, gnl|monDom2|scaffold_39 (16462423-16462195) | |
| 634-804, gnl|oryCun1|scaffold_174564 (52599-52393) | |
| 634-804, gnl|panTro1|chr13 (97497652-97497858) | |
| 634-804, gnl|rheMac2|chr12 (70676022-70676230) | |
| 634-804, gnl|rn3|chr9 (62572563-62572766) | |
| 634-804, gnl|tetNig1|chr3 (6225818-6226016) | |
| 805-972, gnl|bosTau2|chr2 (58213850-58213683) | |
| 805-972, gnl|canFam2|chr37 (18297983-18298258) | |
| 805-972, gnl|dasNov1|scaffold_14324 (70443-70719) | |
| 805-972, gnl|hg17|chr2 (207476918-207477168) | |
| 805-972, gnl|Hg17|chr2 (207476964-207477131) | |
| 805-972, gnl|loxAfr1|scaffold_11125 (48251-48492) | |
| 805-972, gnl|mm7|chr1 (63986421-63986677) | |
| 805-972, gnl|Mm7|chr1 (63986502-63986669) | |
| 805-972, gnl|monDom2|scaffold_39 (16456634-16456382) | |
| 805-972, gnl|oryCun1|scaffold_201185 (61626-61382) | |
| 805-972, gnl|rheMac2|chr12 (70686388-70686629) | |
| 805-972, gnl|rn3|chr9 (62578700-62578955) | |
| 1386-1582, gnl|bosTau2|chr2 (58207300-58207105) | |
| 1386-1582, gnl|canFam2|chr37 (18302296-18302702) | |
| 1386-1582, gnl|dasNov1|scaffold_14324 (75532-75937) | |
| 1386-1582, gnl|echTel1|scaffold_215581 (116-514) | |
| 1386-1582, gnl|hg17|chr2 (207481663-207482063) | |
| 1386-1582, gnl|Hg17|chr2 (207481912-207482102) | |
| 1386-1582, gnl|loxAfr1|scaffold_11125 (52883-53269) | |
| 1386-1582, gnl|mm7|chr1 (63992744-63993085) | |
| 1386-1582, gnl|Mm7|chr1 (63992958-63993128) | |
| 1386-1582, gnl|monDom2|scaffold_39 (16446249-16445870) | |
| 1386-1582, gnl|oryCun1|scaffold_201185 (56600-56218) | |
| 1386-1582, gnl|panTro1|chr13 (97515187-97515587) | |
| 1386-1582, gnl|rheMac2|chr12 (70691096-70691491) | |
| 1386-1582, gnl|rn3|chr9 (62585185-62585541) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| spl (0.429553) | |
| ste (0.270416) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fco (0.157208) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| thg (0.126791) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.429553) | |
| ste (0.270416) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fco (0.157208) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| thg (0.126791) | |
| med (0.116252) | |
| eje (0.0988338) |