Ss1.1-Pig4-TMW8036D10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGTAACGTTGTCCTAACTGGACAGGAAGCCTTGTGAGAAGGGACTCCCTTATGCCTC AGAAGGCAAAAGAGGAAGATTATTTGGACGTTTTGTATAGATTAAGGTTCTTATTGGACT TTCCCTAGGTTTTGGCTTGTTTTTTGTGTTTGTGTTTCTGTCTATAAGAATTATTTGGGG AGGGGCCCAGTGGAGCCTCAGTTAGAGCCCTCCCTCCCTGAGGCAGGTTGGGAGGGACTG GGAGGGCTGCGTGTGCTGAACTGAGGCCGGCACTGCTGGGCTTTTCTGATTTTGCCTCCA AAGGAGAGCGATGTGATACCTACGTGTGTCAGGAAGGGCCTTCCGCATGGGCTTCTGCAG AGGGCCAGTGTTCAGGAGCCCAGGCTCTTTCTGGGGGAGTTTTCCCTCTCGTCCTCCCCT CCTTTCTAGGGCTCGTCCTGAATACTGTCTTCTACCCTCCATTCTCAGGGCCCTTCTGGG GGCCCTCTGGCCCCTGTGAATACGCTGGGGTGCTCCCCGCATAGGTCTCTCCCTTCACTT TTTCTCTGGTGGGAAAACATGCTGCCTCTGCCCTTTGGTTGGGTTTCACCCCAGGGCATC TTGGCCCTGGGAAGGGACCTCTCAGCTGCAGGTGCCAGGGTGGTCACCTGTTGGGCGGTT TTTGGAAAGCTTTCCTCCTCCCCTGCCACTCCTTTCTTTTTGCTGCTTTTCTCCCAAACT CCATTTCTGTCACATTTTTTATAAGAATTTCTCTCATTCTATGGGGCCATAAACCTATTT CGTCTGGAGCCAAAGGGATGCCCTAACTGAACAAAAGAGGTGCAAGGGCGGGGGATCCCA TCAAAACTATTGTTTGTTTTCCAGTGGTTTTCTTTGCTTGTGAGCAAGCTGGATTGAGCT GAGCTGGAAGGGAGAGAATGGGTCTCTGGTCTCTTCTTTCCCTACCGGATGGATTTGGAA TTCACTCGTGCGCTTTACTCCAAATGGCGGTCTTCCCTGAAAAAAGAGGGAGAGGCTTTG CCATTAACTTTTTTGGATCGGTTGGCTGTGCCTGGGGAATGGAGTTAAATGGGGATACTC TGGGGACTGTCCCTCCCCAGCTCCAAGGATGGGAAACTCCCCCTTTTGCTGACTCATTCC GTAACTGGAGAAAGAAGCTCCACTCATTGAAGCCACAGGGCAGCAAGGAAGTTTATACTT TTACTTTTAAATTAAAAATGCCAAGGACGAAGCTGGCTGTTGTGGGCAGGGACTCGGGGA GTGGGGAACAGGAGTGGAACTTCTCCAGATGAATGGACCAGAGATGCGTTACTGGCTTTT TGCCGGTAACTCATTTTACTTTGACCCTCTCTGCCCCTGATTTAAAGAGGTCTGTACTGT ACCCACTTCCCAGACGTCCTTGTATCTCCTACTTTCTCTGGAATTGTATTTTCTAATAAA TGACATTTAGAAAAACAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGTAACGTTGTCCTAACTGGACAGGAAGCCTTGTGAGAAGGGACTCCCTTATGCCTC AGAAGGCAAAAGAGGAAGATTATTTGGACGTTTTGTATAGATTAAGGTTCTTATTGGACT TTCCCTAGGTTTTGGCTTGTTTTTTGTGTTTGTGTTTCTGTCTATAAGAATTATTTGGGG AGGGGCCCAGTGGAGCCTCAGTTAGAGCCCTCCCTCCCTGAGGCAGGTTGGGAGGGACTG GGAGGGCTGCGTGTGCTGAACTGAGGCCGGCACTGCTGGGCTTTTCTGATTTTGCCTCCA AAGGAGAGCGATGTGATACCTACGTGTGTCAGGAAGGGCCTTCCGCATGGGCTTCTGCAG AGGGCCAGTGTTCAGGAGCCCAGGCTCTTTCTGGGGGAGTTTTCCCTCTCGTCCTCCCCT CCTTTCTAGGGCTCGTCCTGAATACTGTCTTCTACCCTCCATTCTCAGGGCCCTTCTGGG GGCCCTCTGGCCCCTGTGAATACGCTGGGGTGCTCCCCGCATAGGTCTCTCCCTTCACTT TTTCTCTGGTGGGAAAACATGCTGCCTCTGCCCTTTGGTTGGGTTTCACCCCAGGGCATC TTGGCCCTGGGAAGGGACCTCTCAGCTGCAGGTGCCAGGGTGGTCACCTGTTGGGCGGTT TTTGGAAAGCTTTCCTCCTCCCCTGCCACTCCTTTCTTTTTGCTGCTTTTCTCCCAAACT CCATTTCTGTCACATTTTTTATAAGAATTTCTCTCATTCTATGGGGCCATAAACCTATTT CGTCTGGAGCCAAAGGGATGCCCTAACTGAACAAAAGAGGTGCAAGGGCGGGGGATCCCA TCAAAACTATTGTTTGTTTTCCAGTGGTTTTCTTTGCTTGTGAGCAAGCTGGATTGAGCT GAGCTGGAAGGGAGAGAATGGGTCTCTGGTCTCTTCTTTCCCTACCGGATGGATTTGGAA TTCACTCGTGCGCTTTACTCCAAATGGCGGTCTTCCCTGAAAAAAGAGGGAGAGGCTTTG CCATTAACTTTTTTGGATCGGTTGGCTGTGCCTGGGGAATGGAGTTAAATGGGGATACTC TGGGGACTGTCCCTCCCCAGCTCCAAGGATGGGAAACTCCCCCTTTTGCTGACTCATTCC GTAACTGGAGAAAGAAGCTCCACTCATTGAAGCCACAGGGCAGCAAGGAAGTTTATACTT TTACTTTTAAATTAAAAATGCCAAGGACGAAGCTGGCTGTTGTGGGCAGGGACTCGGGGA GTGGGGAACAGGAGTGGAACTTCTCCAGATGAATGGACCAGAGATGCGTTACTGGCTTTT TGCCGGTAACTCATTTTACTTTGACCCTCTCTGCCCCTGATTTAAAGAGGTCTGTACTGT ACCCACTTCCCAGACGTCCTTGTATCTCCTACTTTCTCTGGAATTGTATTTTCTAATAAA TGACATTTAGAAAAACAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 7 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 214-337, + strand, RNAmicro p=0.999994 | |
| 212-340, - strand, RNAmicro p=0.999918 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 214-337, + strand, RNAmicro p=0.999994 | |
| 212-340, - strand, RNAmicro p=0.999918 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 137-281, BP169357 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP169357.1|), blast E-value=0, identity=100% | |
| 149-281, 001016BEMN047263HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY045913.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, 010125BEMN053849HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY163396.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, 000829BEMN005716HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY200862.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, LB03030.CR_J16 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE371359.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, LB03086.CR_B03 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE387372.1|), blast E-value=7e-25, identity=87.22% | |
| 260-366, BP169357 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP169357.1|), blast E-value=0, identity=100% | |
| 276-345, BP330759 Sugano cDNA library, rectum Homo sapiens cDNA clone (dbj|BP330759.1|), blast E-value=7e-21, identity=94.29% | |
| 276-345, DA174780 BRAMY2 Homo sapiens cDNA clone BRAMY2037975 5', mRNA (dbj|DA174780.1|), blast E-value=7e-21, identity=94.29% | |
| 276-345, AL539599 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb|AL539599.3|), blast E-value=7e-21, identity=94.29% | |
| 276-345, MR1-SN0035-060400-001-h12 SN0035 Homo sapiens cDNA, mRNA sequence (gb|AW867148.1|), blast E-value=7e-21, identity=94.29% | |
| 276-345, AGENCOURT_7559678 NIH_MGC_70 Homo sapiens cDNA clone IMAGE (gb|BQ222682.1|), blast E-value=7e-21, identity=94.29% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 137-281, BP169357 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP169357.1|), blast E-value=0, identity=100% | |
| 149-281, 001016BEMN047263HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY045913.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, 010125BEMN053849HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY163396.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, 000829BEMN005716HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY200862.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, LB03030.CR_J16 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE371359.1|), blast E-value=7e-25, identity=87.22% | |
| 149-281, LB03086.CR_B03 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE387372.1|), blast E-value=7e-25, identity=87.22% | |
| 260-366, BP169357 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP169357.1|), blast E-value=0, identity=100% | |
| 276-345, BP330759 Sugano cDNA library, rectum Homo sapiens cDNA clone (dbj|BP330759.1|), blast E-value=7e-21, identity=94.29% | |
| 276-345, DA174780 BRAMY2 Homo sapiens cDNA clone BRAMY2037975 5', mRNA (dbj|DA174780.1|), blast E-value=7e-21, identity=94.29% | |
| 276-345, AL539599 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb|AL539599.3|), blast E-value=7e-21, identity=94.29% | |
| 276-345, MR1-SN0035-060400-001-h12 SN0035 Homo sapiens cDNA, mRNA sequence (gb|AW867148.1|), blast E-value=7e-21, identity=94.29% | |
| 276-345, AGENCOURT_7559678 NIH_MGC_70 Homo sapiens cDNA clone IMAGE (gb|BQ222682.1|), blast E-value=7e-21, identity=94.29% |
| Homologous human UTR: 3 entry(ies) | More info |
| Homologous human UTR: 3 entry(ies) | Help | Less info |
| 5' of NM_002646, + | |
| 5' of NM_002646, - | |
| 5' of NM_002646, - |
| Homologous human UTR: 3 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002646, + | |
| 5' of NM_002646, - | |
| 5' of NM_002646, - |
| Aligned organism(s): 14 entry(ies) | More info |
| Aligned organism(s): 14 entry(ies) | Help | Less info |
| 1-566, gnl|bosTau2|chr16 (1976956-1977506) | |
| 1-566, gnl|canFam2|chr38 (3974712-3975434) | |
| 1-566, gnl|echTel1|scaffold_324664 (42556-43306) | |
| 1-566, gnl|hg17|chr1 (201124333-201125110) | |
| 1-566, gnl|Hg17|chr1 (201125264-201124684) | |
| 1-566, gnl|loxAfr1|scaffold_85418 (5828-5074) | |
| 1-566, gnl|mm7|chr1 (133008325-133007644) | |
| 1-566, gnl|Mm7|chr1 (133007463-133008052) | |
| 1-566, gnl|monDom2|scaffold_13 (5652579-5653368) | |
| 1-566, gnl|panTro1|chr1 (184065814-184066591) | |
| 1-566, gnl|rheMac2|chr1 (166008709-166007930) | |
| 1-566, gnl|rn3|chr13 (46028559-46027771) | |
| 669-1460, gnl|bosTau2|chr16 (1977566-1978369) | |
| 669-1460, gnl|Hg17|chr1 (201124583-201123413) |
| Aligned organism(s): 14 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-566, gnl|bosTau2|chr16 (1976956-1977506) | |
| 1-566, gnl|canFam2|chr38 (3974712-3975434) | |
| 1-566, gnl|echTel1|scaffold_324664 (42556-43306) | |
| 1-566, gnl|hg17|chr1 (201124333-201125110) | |
| 1-566, gnl|Hg17|chr1 (201125264-201124684) | |
| 1-566, gnl|loxAfr1|scaffold_85418 (5828-5074) | |
| 1-566, gnl|mm7|chr1 (133008325-133007644) | |
| 1-566, gnl|Mm7|chr1 (133007463-133008052) | |
| 1-566, gnl|monDom2|scaffold_13 (5652579-5653368) | |
| 1-566, gnl|panTro1|chr1 (184065814-184066591) | |
| 1-566, gnl|rheMac2|chr1 (166008709-166007930) | |
| 1-566, gnl|rn3|chr13 (46028559-46027771) | |
| 669-1460, gnl|bosTau2|chr16 (1977566-1978369) | |
| 669-1460, gnl|Hg17|chr1 (201124583-201123413) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| nep (0.36785) | |
| ill (0.351185) | |
| cag (0.302389) | |
| med (0.232504) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| nep (0.36785) | |
| ill (0.351185) | |
| cag (0.302389) | |
| med (0.232504) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| cty (0.10408) |