Non-Coding RNA Search

Ss1.1-Pig4-TMW8036D13.3

Sequence:


               
               GTCATGTGCAGCCAGGAGGCCAGGACGCACACGCACCCCGAGTCAGCGGGTTTGGTCTTT
AGGAGGTGGAGACCATGCAGGCCTCTGGCTCTGGGACAGTCTTCCTAGACCACCCCTCAT
CTCACGTCTCCTAGACCTTCGGCTGGCTTGCCTTAGGCTGAACAAGCAGAGAGCTTTCCA
CCCAAAAGGGCCATGTGGCGGCTGCCGGAACCACGGGTGAGGACGCAAAGGCAGCCACAC
TGAGGCTCAGCCAGGCCTTGGTTAGTGACCATGACAGTGCCTACGGAGGTTCTAAAACAC
TCTGTCTGTAAGTCCCTGCCCACTCGTTTTGTCCTTCGTTTTGGTTTCAGGGAGCGATAG
AGCCATCACAGCCGCGTTCTTCTCTGCTTCCCAGCATAGCAAGTGCAGCCCTTTTGTGGT
TTCATGAATACTTTTGGCAGGTGGTAGGAGGATGCTGATGGTTGATAGAACTGACATCAG
GGAGGGTAAATCCTGGGCTAATAGAGAGACCCTGTCCCTCACATAAGCCCCATGTGACAG
TATCAGCGCTCCATCCAGGCTTGGCCAAGAAACGAGTCAGACCCCAGGGGACAGGGGCAC
GAGTGGCGATCCCTTCCCACCAGGTCAGCACTGGGCCAGCGGATGAGCTCTGCCAGGACA
GTGACCTCTCACCCCCAGGCCCACCTGCTCCCTCACGGTTATGCCCTGTCACGTAAGCCG
ATCCACGGTTACCTGAAAGCGCTGGCCAGTGACAAGCCAGGAGGGAAATACTCCAGTCTT
ACTAGGAAGTCAGGGTTTGTCATGAGGTCGCCATGTCCTGACTTGTCAGAAAGCCCACCC
TGTCCACTTCCCTTTTCCGACCAGATCCTCGTGGTCATGTGCTAAGGGATCTGGCTGTCC
GCCTTGTCCGGCTGCCTGGCGCCTGGGGCCACATGAAGCGGCACCACAACACAGCAGACA
CATTTTCACGTTTGCCCACGTAGGTGTGCCGGGTGTTGGGGTCTCGGCCCGTGGGGCACT
GAGTGTGCAGGTGGCCAACGGACAGGGCAACTTGCTTCCCGTAACAGCCTCATTTCCCCT
CGGAAACCAGAGATTTCGCAGACGCGCTTCCGTGGACAATTTCAGCACTTCATCCTTTCT
CTGTGAACCCCTCTTCTTCTGGATGTGAACCGTGCTGTGGATAAATCATCATTTGTATTT
CTTGAATGTTCTCTATGACTAACAGTTAAGTCGATTGTGTATATGTGTAACTAATGTAAC
TGCCTTTTAAAATTTCAGTACAATAAAAATGACTTTGCTCTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATGTGCAGCCAGGAGGCCAGGACGCACACGCACCCCGAGTCAGCGGGTTTGGTCTTT
AGGAGGTGGAGACCATGCAGGCCTCTGGCTCTGGGACAGTCTTCCTAGACCACCCCTCAT
CTCACGTCTCCTAGACCTTCGGCTGGCTTGCCTTAGGCTGAACAAGCAGAGAGCTTTCCA
CCCAAAAGGGCCATGTGGCGGCTGCCGGAACCACGGGTGAGGACGCAAAGGCAGCCACAC
TGAGGCTCAGCCAGGCCTTGGTTAGTGACCATGACAGTGCCTACGGAGGTTCTAAAACAC
TCTGTCTGTAAGTCCCTGCCCACTCGTTTTGTCCTTCGTTTTGGTTTCAGGGAGCGATAG
AGCCATCACAGCCGCGTTCTTCTCTGCTTCCCAGCATAGCAAGTGCAGCCCTTTTGTGGT
TTCATGAATACTTTTGGCAGGTGGTAGGAGGATGCTGATGGTTGATAGAACTGACATCAG
GGAGGGTAAATCCTGGGCTAATAGAGAGACCCTGTCCCTCACATAAGCCCCATGTGACAG
TATCAGCGCTCCATCCAGGCTTGGCCAAGAAACGAGTCAGACCCCAGGGGACAGGGGCAC
GAGTGGCGATCCCTTCCCACCAGGTCAGCACTGGGCCAGCGGATGAGCTCTGCCAGGACA
GTGACCTCTCACCCCCAGGCCCACCTGCTCCCTCACGGTTATGCCCTGTCACGTAAGCCG
ATCCACGGTTACCTGAAAGCGCTGGCCAGTGACAAGCCAGGAGGGAAATACTCCAGTCTT
ACTAGGAAGTCAGGGTTTGTCATGAGGTCGCCATGTCCTGACTTGTCAGAAAGCCCACCC
TGTCCACTTCCCTTTTCCGACCAGATCCTCGTGGTCATGTGCTAAGGGATCTGGCTGTCC
GCCTTGTCCGGCTGCCTGGCGCCTGGGGCCACATGAAGCGGCACCACAACACAGCAGACA
CATTTTCACGTTTGCCCACGTAGGTGTGCCGGGTGTTGGGGTCTCGGCCCGTGGGGCACT
GAGTGTGCAGGTGGCCAACGGACAGGGCAACTTGCTTCCCGTAACAGCCTCATTTCCCCT
CGGAAACCAGAGATTTCGCAGACGCGCTTCCGTGGACAATTTCAGCACTTCATCCTTTCT
CTGTGAACCCCTCTTCTTCTGGATGTGAACCGTGCTGTGGATAAATCATCATTTGTATTT
CTTGAATGTTCTCTATGACTAACAGTTAAGTCGATTGTGTATATGTGTAACTAATGTAAC
TGCCTTTTAAAATTTCAGTACAATAAAAATGACTTTGCTCTGAAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               59-1041, gnl|bosTau2|chr21 (19566511-19565539)
               

               
               59-1041, gnl|Hg17|chr15 (78676051-78677037)
               


               
               1042-1304, gnl|bosTau2|chr21 (19565514-19565251)
               

               
               1042-1304, gnl|Hg17|chr15 (78677061-78677326)
               

               
               1042-1304, gnl|Mm7|chr7 (80168108-80167859)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-1041, gnl|bosTau2|chr21 (19566511-19565539)
               

               
               59-1041, gnl|Hg17|chr15 (78676051-78677037)
               


               
               1042-1304, gnl|bosTau2|chr21 (19565514-19565251)
               

               
               1042-1304, gnl|Hg17|chr15 (78677061-78677326)
               

               
               1042-1304, gnl|Mm7|chr7 (80168108-80167859)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               kid (0.129735)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               kid (0.129735)

	59-1041, gnl\|bosTau2\|chr21 (19566511-19565539)
	59-1041, gnl\|Hg17\|chr15 (78676051-78677037)

	1042-1304, gnl\|bosTau2\|chr21 (19565514-19565251)
	1042-1304, gnl\|Hg17\|chr15 (78677061-78677326)
	1042-1304, gnl\|Mm7\|chr7 (80168108-80167859)

	ece (0.45861)
	elu (0.385356)
	eye (0.341006)
	fhi (0.339155)
	hyp (0.285673)
	fce (0.271592)
	ebs (0.236602)
	ecc (0.23007)
	kid (0.129735)