Non-Coding RNA Search

Ss1.1-Pig4-TMW8036D14.3

Sequence:


               
               GTTTTTTGGTGCTCACAGGGGCCAATATGAAGCAGCATAGTTGGCTTATCTCCTCCGTGG
CCTCCTTTCCTCCCATCTTGAACAAATGAGAAATGAAACAGGAAACACTGGATACACATC
TACCATGAACCACAGAGGGCTGCCACGGGGCCTGGTGCTTAAATACATCAAAGTTCTCAA
ACCCAGTTTGGTTTGCATTGCCTTTCACAGTGGCTGTTAGCTCTACCCTGAAAAGGTGTG
AGTTAATTTAATTCTTCAACATTGAGACATAATTCAACACACTGTGGGGAAACAACATCT
CAAGGGATCAGATAGTGAATACGTTTATAAAACAGGAAATCCTCTTGTGATACAAGCAAC
TGCCTCTTTGTAGGAATGACTTGTTTTAATGTTGAATTTTCTTCAACAGGAGCACACCTC
CGTCCAATCTCCTTCCCCAGGTCTCTGCTGGGTGTGGAGTCATTCCTAATGTGATGCTTT
CAGATACTTAGTGAATGTTTCTGATAACCTTTGTCTTATTTCTGGAACACAATTTGAGGG
ATTTATATTGTTTTAGATCATAATTTCCCAATCAGTTGGTTAAAATCCTCCAAATTCTGA
AATCTACACATTCCTACCCTAGAGACTATAGGTCTTAGCTCTTCTCCCTTCTGACTCTAG
GATCAAGCCCTGGGACAATGAATCAGTGCACAGCCCTTCACTTTCAAGAGAGCAGCCACA
TAACATGAACTGTCTGGTGCTACAACTTAGCTAATGTATTTAATGCTATTCTTTTTTTTT
TTTGTATTGCTAGTTCAAATACCATTAGTATTATTTTAAGTTATGTCATTAAAAACAAAC
AAGCAAACAACCATGGTTGTGGAAGCACAATTCTACCTATCACTCCTCCCAAATGGTTTT
ATGTGGTACATGGCCTCATCCATTGCCTTGTATGCACCTCTGTGCTATTTTGCCAGGCCC
AGCCTCATTAAGGGGTACCTTGGTGGGTACCTTAGTATTTAAAACCAGACTGTAACTATA
GCCTGCCATTGCATGGCATCAATAAATGGCCAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTGGTGCTCACAGGGGCCAATATGAAGCAGCATAGTTGGCTTATCTCCTCCGTGG
CCTCCTTTCCTCCCATCTTGAACAAATGAGAAATGAAACAGGAAACACTGGATACACATC
TACCATGAACCACAGAGGGCTGCCACGGGGCCTGGTGCTTAAATACATCAAAGTTCTCAA
ACCCAGTTTGGTTTGCATTGCCTTTCACAGTGGCTGTTAGCTCTACCCTGAAAAGGTGTG
AGTTAATTTAATTCTTCAACATTGAGACATAATTCAACACACTGTGGGGAAACAACATCT
CAAGGGATCAGATAGTGAATACGTTTATAAAACAGGAAATCCTCTTGTGATACAAGCAAC
TGCCTCTTTGTAGGAATGACTTGTTTTAATGTTGAATTTTCTTCAACAGGAGCACACCTC
CGTCCAATCTCCTTCCCCAGGTCTCTGCTGGGTGTGGAGTCATTCCTAATGTGATGCTTT
CAGATACTTAGTGAATGTTTCTGATAACCTTTGTCTTATTTCTGGAACACAATTTGAGGG
ATTTATATTGTTTTAGATCATAATTTCCCAATCAGTTGGTTAAAATCCTCCAAATTCTGA
AATCTACACATTCCTACCCTAGAGACTATAGGTCTTAGCTCTTCTCCCTTCTGACTCTAG
GATCAAGCCCTGGGACAATGAATCAGTGCACAGCCCTTCACTTTCAAGAGAGCAGCCACA
TAACATGAACTGTCTGGTGCTACAACTTAGCTAATGTATTTAATGCTATTCTTTTTTTTT
TTTGTATTGCTAGTTCAAATACCATTAGTATTATTTTAAGTTATGTCATTAAAAACAAAC
AAGCAAACAACCATGGTTGTGGAAGCACAATTCTACCTATCACTCCTCCCAAATGGTTTT
ATGTGGTACATGGCCTCATCCATTGCCTTGTATGCACCTCTGTGCTATTTTGCCAGGCCC
AGCCTCATTAAGGGGTACCTTGGTGGGTACCTTAGTATTTAAAACCAGACTGTAACTATA
GCCTGCCATTGCATGGCATCAATAAATGGCCAAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               82-197, + strand, RNAz p=0.925702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-197, + strand, RNAz p=0.925702

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1056, gnl|bosTau2|chr19 (20117517-20116502)
               

               
               4-1056, gnl|Hg17|chr5 (33560428-33559399)
               

               
               4-1056, gnl|Mm7|chr15 (11406408-11407384)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1056, gnl|bosTau2|chr19 (20117517-20116502)
               

               
               4-1056, gnl|Hg17|chr5 (33560428-33559399)
               

               
               4-1056, gnl|Mm7|chr15 (11406408-11407384)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               vin (0.332557)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)

	4-1056, gnl\|bosTau2\|chr19 (20117517-20116502)
	4-1056, gnl\|Hg17\|chr5 (33560428-33559399)
	4-1056, gnl\|Mm7\|chr15 (11406408-11407384)

	vin (0.332557)
	sin (0.174948)
	rec (0.17307)
	bfe (0.149858)
	ski (0.146735)