Non-Coding RNA Search

Ss1.1-Pig4-TMW8036D17.3

Sequence:


               
               GTATGGAAATCTTCACACACACGGAACCCTTTGTAGGTTGTCCTTTAGGGAGCTTCTGAC
GGTTTCTTTGGCCTGATGAGCTCTCTTTCTGGCCTCAGGGGCGTCTTGAGGGTCGGACCT
GGGAAGCCAGGTCTCTGGCCCCCTGCCGCCCTCTGCCCGGTGTCGGTCAGCACTCAGCTT
TGTCATTTTGTCACTGCAGATTGATCCAGTGGGTACATATGCTAATTAACATGAGTCTTT
TTCCTTATTTAAAGGAGTCCCTCTTGCTGAAAGTAGCTGATTACTATTACTATAGTGTAT
AAAAGTATTGTTTGTGCTGAAAATCCATTGCCATTTGGTACAAATGACATTTGTTCTTTC
TGTGAAAGAGAGATGCCCTCGAGTGTGTTTGTACACAGACCCTCACGATGGCGGCTGGCA
GGACCTGTAGCTTCTCGCTGCTTTGGGTGACGGGCGACACCACGGGGAGGCCAAGGCGGA
CGGGGCCCTTCTCAGTCACTCTCCCCTTTACTGCACTGGCGAAGGGCTGCGGCCCCTCTC
CGTCTCTCCAGTCCAGTCCGACTTGACCTCTGCCTTGATGTCCACGTGCTGAAGCTTGAA
CAGCTGTGGTGTCAGATCTTCGGGGCGTAGGAAGTACATGTGTGGGCGCCAGAGTGCACA
CACTTAGCCCCTCCGGAGCTCACAGTGTGTGTGAGCACTGTGTTGGCTGTGCTTCCAAAC
ATTTGCTTAGTTTTCAACTGGAAAAAAACTTACTATGTGATGTCACGAAATGCAAGCTGC
TGACAATCCGGGAACCACAGCCAGCCAAGCGACTGTAAAGTACCCATGCCCTTGGCGGCA
CGTGGCCCTTCCAGAGGGTCGCCCGACACAACAGGCAGGGGGGAGACGTTCCTTCTTTGC
AAGTTGGTGAAAACAGACTCTCCCAGGGAATTGTATCGTCTTTTCGAGTATCATCATAGT
TAACTCTGGGAAGCCTTGTTTTCCCCTATTTTAGAGAATGCTGGGTTTAATGAAACTGGT
TAAAAATTAGTTTTTGTTTAAAGTAAGTGTTCTTTCCAGGTGAGAACTTTTTTGGTTTGT
TTTAAAGGTAAGAACAGGAGGGGAAACTTTGCTTTTTTAATTTAATCATTACATTCAGCC
TAGAATGACTTAACTTGATTATTAGACAGTGATACCACTAAAAAGTTTTAAGTTTTCAGA
AATTAATTGTAAACATCAGTTCAGTCCTTAGTTTATGGCAGAGACAACTGTCTTAAGATA
AACCCTCATTTTGGTGCAGTGTTTGATGTTCAAAACAAAATGTTACAACAATAAACAAAC
ATAAACTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATGGAAATCTTCACACACACGGAACCCTTTGTAGGTTGTCCTTTAGGGAGCTTCTGAC
GGTTTCTTTGGCCTGATGAGCTCTCTTTCTGGCCTCAGGGGCGTCTTGAGGGTCGGACCT
GGGAAGCCAGGTCTCTGGCCCCCTGCCGCCCTCTGCCCGGTGTCGGTCAGCACTCAGCTT
TGTCATTTTGTCACTGCAGATTGATCCAGTGGGTACATATGCTAATTAACATGAGTCTTT
TTCCTTATTTAAAGGAGTCCCTCTTGCTGAAAGTAGCTGATTACTATTACTATAGTGTAT
AAAAGTATTGTTTGTGCTGAAAATCCATTGCCATTTGGTACAAATGACATTTGTTCTTTC
TGTGAAAGAGAGATGCCCTCGAGTGTGTTTGTACACAGACCCTCACGATGGCGGCTGGCA
GGACCTGTAGCTTCTCGCTGCTTTGGGTGACGGGCGACACCACGGGGAGGCCAAGGCGGA
CGGGGCCCTTCTCAGTCACTCTCCCCTTTACTGCACTGGCGAAGGGCTGCGGCCCCTCTC
CGTCTCTCCAGTCCAGTCCGACTTGACCTCTGCCTTGATGTCCACGTGCTGAAGCTTGAA
CAGCTGTGGTGTCAGATCTTCGGGGCGTAGGAAGTACATGTGTGGGCGCCAGAGTGCACA
CACTTAGCCCCTCCGGAGCTCACAGTGTGTGTGAGCACTGTGTTGGCTGTGCTTCCAAAC
ATTTGCTTAGTTTTCAACTGGAAAAAAACTTACTATGTGATGTCACGAAATGCAAGCTGC
TGACAATCCGGGAACCACAGCCAGCCAAGCGACTGTAAAGTACCCATGCCCTTGGCGGCA
CGTGGCCCTTCCAGAGGGTCGCCCGACACAACAGGCAGGGGGGAGACGTTCCTTCTTTGC
AAGTTGGTGAAAACAGACTCTCCCAGGGAATTGTATCGTCTTTTCGAGTATCATCATAGT
TAACTCTGGGAAGCCTTGTTTTCCCCTATTTTAGAGAATGCTGGGTTTAATGAAACTGGT
TAAAAATTAGTTTTTGTTTAAAGTAAGTGTTCTTTCCAGGTGAGAACTTTTTTGGTTTGT
TTTAAAGGTAAGAACAGGAGGGGAAACTTTGCTTTTTTAATTTAATCATTACATTCAGCC
TAGAATGACTTAACTTGATTATTAGACAGTGATACCACTAAAAAGTTTTAAGTTTTCAGA
AATTAATTGTAAACATCAGTTCAGTCCTTAGTTTATGGCAGAGACAACTGTCTTAAGATA
AACCCTCATTTTGGTGCAGTGTTTGATGTTCAAAACAAAATGTTACAACAATAAACAAAC
ATAAACTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               302-418, - strand, RNAz p=0.948605

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-418, - strand, RNAz p=0.948605

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               371-436, + strand, RNAmicro p=0.999155

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               371-436, + strand, RNAmicro p=0.999155

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               58-858, gnl|bosTau2|chr24 (27024512-27025299)
               

               
               58-858, gnl|Hg17|chr18 (2908282-2907458)
               

               
               58-858, gnl|Mm7|chr17 (69528057-69528786)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-858, gnl|bosTau2|chr24 (27024512-27025299)
               

               
               58-858, gnl|Hg17|chr18 (2908282-2907458)
               

               
               58-858, gnl|Mm7|chr17 (69528057-69528786)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               tes (0.415628)
               

               
               cje (0.330469)
               

               
               lun (0.300978)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cbl (0.229595)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cje (0.330469)
               

               
               lun (0.300978)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cbl (0.229595)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	58-858, gnl\|bosTau2\|chr24 (27024512-27025299)
	58-858, gnl\|Hg17\|chr18 (2908282-2907458)
	58-858, gnl\|Mm7\|chr17 (69528057-69528786)

	tes (0.415628)
	cje (0.330469)
	lun (0.300978)
	pla (0.267344)
	cov (0.264306)
	cbl (0.229595)
	ldo (0.194005)
	ton (0.1755)
	mcp (0.170648)
	fhi (0.169578)
	spl (0.143184)
	ute (0.132784)
	ova (0.129132)
	pgl (0.118483)
	spc (0.113366)
	nbm (0.0993246)