Non-Coding RNA Search

Ss1.1-Pig4-TMW8036D19.3

Sequence:


               
               AAAATAGAAATTGTATATTGCCACATCTTGCCGGACCCATATCTGAAACCTTAACCCACC
AAATTTTCTACAACTTACCTACCAAGTTGTACACATTCCAAATCCCCCCTATTTTGGGGA
GCTGGGAGATGTCATATCTGCTTAGCAGAAATCTTGGAATCTTGGGGCTGGGGAGTAGGG
CTGGAATAGAGGAAATGGGGTTATTGAAAAGCCCCCAATAGAACCAGCCAGGGAAGCGGA
TCCTTGAAGATTTACTTCTGAGAATCCTTCCCAAGAATGCAAGTGAGACTACACCCATTC
TTGATATTGTAAAACATATTCTGTTTTGGAGATCTCAAAGCCTAAATTCTTTTGTTTACA
ACCTCACCAACTCATCTCGCCCCTCAGCTTCTGCTGCCCATACAAGTGTTAAGCATTTTT
CTCTTATTATGATCAAGTTGGTGTTAAAACTTACAAATGGAGTTGAAGCACAGATATTTT
TATGAATGTGATAAAATATTTTTTTAAGTAAAAGCTAGAGGCTATCAGTCAAATCAAACA
CCACATGGATGTCAGTTGGTTTAAGAAAAGGGAGCTCAGGACTTTTTATTACTGTATTTA
TAAATGTGTTTGAAAGAATTTGTAAACATCACAGGTACATTTTTAAAGTGACACACATTC
GCTCCATAAACAATTAATAATTATAAAATGAGCTTAAATGGCATTTGCCAGTAATTTTGC
TTCACATGATCAGTATTGGTATTGTTATGAACTATGTAACTTCATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATAGAAATTGTATATTGCCACATCTTGCCGGACCCATATCTGAAACCTTAACCCACC
AAATTTTCTACAACTTACCTACCAAGTTGTACACATTCCAAATCCCCCCTATTTTGGGGA
GCTGGGAGATGTCATATCTGCTTAGCAGAAATCTTGGAATCTTGGGGCTGGGGAGTAGGG
CTGGAATAGAGGAAATGGGGTTATTGAAAAGCCCCCAATAGAACCAGCCAGGGAAGCGGA
TCCTTGAAGATTTACTTCTGAGAATCCTTCCCAAGAATGCAAGTGAGACTACACCCATTC
TTGATATTGTAAAACATATTCTGTTTTGGAGATCTCAAAGCCTAAATTCTTTTGTTTACA
ACCTCACCAACTCATCTCGCCCCTCAGCTTCTGCTGCCCATACAAGTGTTAAGCATTTTT
CTCTTATTATGATCAAGTTGGTGTTAAAACTTACAAATGGAGTTGAAGCACAGATATTTT
TATGAATGTGATAAAATATTTTTTTAAGTAAAAGCTAGAGGCTATCAGTCAAATCAAACA
CCACATGGATGTCAGTTGGTTTAAGAAAAGGGAGCTCAGGACTTTTTATTACTGTATTTA
TAAATGTGTTTGAAAGAATTTGTAAACATCACAGGTACATTTTTAAAGTGACACACATTC
GCTCCATAAACAATTAATAATTATAAAATGAGCTTAAATGGCATTTGCCAGTAATTTTGC
TTCACATGATCAGTATTGGTATTGTTATGAACTATGTAACTTCATGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               42-159, - strand, RNAz p=0.617883

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-159, - strand, RNAz p=0.617883

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-200, gnl|bosTau2|chr19 (27942780-27942583)
               

               
               2-200, gnl|Hg17|chr5 (35092474-35092291)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-200, gnl|bosTau2|chr19 (27942780-27942583)
               

               
               2-200, gnl|Hg17|chr5 (35092474-35092291)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgp (0.230681)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	2-200, gnl\|bosTau2\|chr19 (27942780-27942583)
	2-200, gnl\|Hg17\|chr5 (35092474-35092291)