Ss1.1-Pig4-TMW8036D23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCGGCCAGGGCGGCCGGTGGGACCGCGGGTCCCCGGCGCAGCGCCGCCCGGCTC CCGGCCCTGCCGGCCTCCTCCCTCGGCGCCGCGGCCATGGCGGCCAGCGCGAAGCGGAAG CAGGAGGAGAAGCACCTGAAGATGCTGCGGGACATGACCGGCCTCCCGCACAACCGAAAG TGCTTCGACTGCGACCAGCGCGGCCCCACCTACGTGAACATGACGGTCGGCTCCTTCGTC TGTACCTCCTGCTCCGGCAGCCTGCGAGGGTTAAATCCACCACACAGGGTGAAATCCATC TCTATGACAACATTCACACAACAGGAAATTGAGTTCCTTCAAAAACATGGAAATGAAGTC TGTAAACAGATTTGGCTAGGATTATTTGATGATAGATCTTCAGCAATTCCAGACTTCAGG GATCCACAAAAAGTGAAAGAATTCCTACAAGAAAAATATGAAAAGAAAAGATGGTATGTC CCACCAGAACAAGCCAAAGTGGTGGCATCAGTTCATGCATCTATTTCAGGGTCCTCTGCC AGTAGCACAAGCAGCACACCTGAGGTCAAACCACTGAAGTCTCTTTTAGGAGATTCAGCA CCAGCACTGCACTTAAATAAGGGCACACCTACTCAGTCCCCTGTCGTAGGTCGCTCTCAA GGGCAGCAGCAGGAAAAGAAGCAGTTTGACCTTTTAAGTGATCTTGGCTCAGACATTTTT GCTGCTCCAGCACCTCAGTCAACGGCTACAGCCAATTTTGCTAACTTTGCACATTTCAAC AGTCATGCAGCTCAGAATTCTGCAAATGCAGATTTTGCAAACTTTGATGCATTTGGACAG TCTAGTGGTTCGAGTAATTTTGGAGGTTTCCCCACAGCAAGTCACTCTTCTTTTCAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCGGCCAGGGCGGCCGGTGGGACCGCGGGTCCCCGGCGCAGCGCCGCCCGGCTC CCGGCCCTGCCGGCCTCCTCCCTCGGCGCCGCGGCCATGGCGGCCAGCGCGAAGCGGAAG CAGGAGGAGAAGCACCTGAAGATGCTGCGGGACATGACCGGCCTCCCGCACAACCGAAAG TGCTTCGACTGCGACCAGCGCGGCCCCACCTACGTGAACATGACGGTCGGCTCCTTCGTC TGTACCTCCTGCTCCGGCAGCCTGCGAGGGTTAAATCCACCACACAGGGTGAAATCCATC TCTATGACAACATTCACACAACAGGAAATTGAGTTCCTTCAAAAACATGGAAATGAAGTC TGTAAACAGATTTGGCTAGGATTATTTGATGATAGATCTTCAGCAATTCCAGACTTCAGG GATCCACAAAAAGTGAAAGAATTCCTACAAGAAAAATATGAAAAGAAAAGATGGTATGTC CCACCAGAACAAGCCAAAGTGGTGGCATCAGTTCATGCATCTATTTCAGGGTCCTCTGCC AGTAGCACAAGCAGCACACCTGAGGTCAAACCACTGAAGTCTCTTTTAGGAGATTCAGCA CCAGCACTGCACTTAAATAAGGGCACACCTACTCAGTCCCCTGTCGTAGGTCGCTCTCAA GGGCAGCAGCAGGAAAAGAAGCAGTTTGACCTTTTAAGTGATCTTGGCTCAGACATTTTT GCTGCTCCAGCACCTCAGTCAACGGCTACAGCCAATTTTGCTAACTTTGCACATTTCAAC AGTCATGCAGCTCAGAATTCTGCAAATGCAGATTTTGCAAACTTTGATGCATTTGGACAG TCTAGTGGTTCGAGTAATTTTGGAGGTTTCCCCACAGCAAGTCACTCTTCTTTTCAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 788-900, + strand, RNAz p=0.534514 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 788-900, + strand, RNAz p=0.534514 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 33-268, gnl|bosTau2|chr2 (69205781-69206016) | |
| 33-268, gnl|Hg17|chr2 (228162394-228162814) | |
| 33-268, gnl|Mm7|chr1 (83048357-83048579) | |
| 473-636, gnl|bosTau2|chr2 (69257038-69257201) | |
| 473-636, gnl|canFam2|chr25 (43275343-43275534) | |
| 473-636, gnl|danRer3|chrNA (116663230-116663042) | |
| 473-636, gnl|dasNov1|scaffold_63394 (3534-3726) | |
| 473-636, gnl|echTel1|scaffold_298062 (35939-35748) | |
| 473-636, gnl|galGal2|chr9 (4167075-4166904) | |
| 473-636, gnl|hg17|chr2 (228213983-228214175) | |
| 473-636, gnl|Hg17|chr2 (228213983-228214146) | |
| 473-636, gnl|loxAfr1|scaffold_12153 (52628-52438) | |
| 473-636, gnl|mm7|chr1 (83083972-83084141) | |
| 473-636, gnl|Mm7|chr1 (83083972-83084135) | |
| 473-636, gnl|monDom2|scaffold_28 (9037476-9037669) | |
| 473-636, gnl|oryCun1|scaffold_212389 (9966-10156) | |
| 473-636, gnl|panTro1|chr13 (118810260-118810452) | |
| 473-636, gnl|rheMac2|chr12 (91416197-91416389) | |
| 473-636, gnl|rn3|chr9 (82377672-82377861) | |
| 473-636, gnl|tetNig1|chr15 (3030723-3030863) | |
| 473-636, gnl|xenTro1|scaffold_108 (651366-651176) | |
| 788-900, gnl|bosTau2|chr2 (69263240-69263352) | |
| 788-900, gnl|canFam2|chr6 (12138526-12138402) | |
| 788-900, gnl|danRer3|chr2 (7424578-7424720) | |
| 788-900, gnl|dasNov1|scaffold_68542 (7657-7791) | |
| 788-900, gnl|echTel1|scaffold_214647 (8750-8891) | |
| 788-900, gnl|Hg17|chr2 (228221309-228221421) | |
| 788-900, gnl|hg17|chr7 (99797844-99797978) | |
| 788-900, gnl|loxAfr1|scaffold_6966 (71088-71222) | |
| 788-900, gnl|Mm7|chr1 (83088690-83088802) | |
| 788-900, gnl|mm7|chr5 (136579518-136579399) | |
| 788-900, gnl|monDom2|scaffold_66 (2402842-2402969) | |
| 788-900, gnl|oryCun1|scaffold_200122 (37789-37661) | |
| 788-900, gnl|panTro1|chr6 (101572730-101572864) | |
| 788-900, gnl|rn3|chr12 (19717990-19717868) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-268, gnl|bosTau2|chr2 (69205781-69206016) | |
| 33-268, gnl|Hg17|chr2 (228162394-228162814) | |
| 33-268, gnl|Mm7|chr1 (83048357-83048579) | |
| 473-636, gnl|bosTau2|chr2 (69257038-69257201) | |
| 473-636, gnl|canFam2|chr25 (43275343-43275534) | |
| 473-636, gnl|danRer3|chrNA (116663230-116663042) | |
| 473-636, gnl|dasNov1|scaffold_63394 (3534-3726) | |
| 473-636, gnl|echTel1|scaffold_298062 (35939-35748) | |
| 473-636, gnl|galGal2|chr9 (4167075-4166904) | |
| 473-636, gnl|hg17|chr2 (228213983-228214175) | |
| 473-636, gnl|Hg17|chr2 (228213983-228214146) | |
| 473-636, gnl|loxAfr1|scaffold_12153 (52628-52438) | |
| 473-636, gnl|mm7|chr1 (83083972-83084141) | |
| 473-636, gnl|Mm7|chr1 (83083972-83084135) | |
| 473-636, gnl|monDom2|scaffold_28 (9037476-9037669) | |
| 473-636, gnl|oryCun1|scaffold_212389 (9966-10156) | |
| 473-636, gnl|panTro1|chr13 (118810260-118810452) | |
| 473-636, gnl|rheMac2|chr12 (91416197-91416389) | |
| 473-636, gnl|rn3|chr9 (82377672-82377861) | |
| 473-636, gnl|tetNig1|chr15 (3030723-3030863) | |
| 473-636, gnl|xenTro1|scaffold_108 (651366-651176) | |
| 788-900, gnl|bosTau2|chr2 (69263240-69263352) | |
| 788-900, gnl|canFam2|chr6 (12138526-12138402) | |
| 788-900, gnl|danRer3|chr2 (7424578-7424720) | |
| 788-900, gnl|dasNov1|scaffold_68542 (7657-7791) | |
| 788-900, gnl|echTel1|scaffold_214647 (8750-8891) | |
| 788-900, gnl|Hg17|chr2 (228221309-228221421) | |
| 788-900, gnl|hg17|chr7 (99797844-99797978) | |
| 788-900, gnl|loxAfr1|scaffold_6966 (71088-71222) | |
| 788-900, gnl|Mm7|chr1 (83088690-83088802) | |
| 788-900, gnl|mm7|chr5 (136579518-136579399) | |
| 788-900, gnl|monDom2|scaffold_66 (2402842-2402969) | |
| 788-900, gnl|oryCun1|scaffold_200122 (37789-37661) | |
| 788-900, gnl|panTro1|chr6 (101572730-101572864) | |
| 788-900, gnl|rn3|chr12 (19717990-19717868) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| ecc (0.115035) | |
| cty (0.10408) |