Ss1.1-Pig4-TMW8036E02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTTTCAGCGCATCTGACTGTGAGGGCCAAGACGTCGTATATCTGCTGCGGGAAGCCAT CAAGCGCAGACAGGCAGTGAAGCTGAATGTGGTTGCTATTGTCAATGACACGGTGGGGAC CATGATGTCCTGTGGCTATGAGAATCCCCACTGCGAGGTCGGCCTTATTGTTGGAACTGG CACCAATGCCTGCTACATGGAGGAGCTCCGGAATGTGGCAAGTGTACCTGGGGACTCAGG CCACATGTGCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTCTCTAGGCATGCT CAGCACCTACTTTGATGAAAGGGTGGATCAGGCTTCCATCAACCCCGGCAGGCAGAGGTT TGAGAAGATGATCAGTGGCATGTACCTGGGGGAGATTGTCCGCCACATACTCCTGCATCT GACCAGCCGTGGAGTTCTCTTCCGGGGCCAGCAGATCCAGTGCCTCCAGACCAGGGACAT CTTCAAGACCAAGTTTCTCTCTCAGATTGAAAGCGACAGCCTGGCTCTGAGGCAGGTCCG AGCCATCCTGGAGGATCTGGGGCTGCCCCTGACCTCAGATGATGCCCTGATGGTCCTGGA GGTGTGCCAGGCTGTGTCCAGGCGGGCCGCCCAGCTTTGTGGGGCAGGTGTGGCTGCTGT GGTGGAGAAGATCCGTGAGAACCGGGGCCTGGAAAAGCTGACCGTGTCTGTGGGGGTGGA TGGGACCCTCTACAAGCTACATCCCCACTTCTCCAGGCTGGTGGAAGAAACAGTGCAGGA GCTGGCCCCTTGCTGTGAGGTCACCTTTCTGCAATCAAAGGACGGGTCTGGCAAAGGTGC AGCCCTGGTCACCGCTGTTGCCTGCCGCCTTGCCCAGATGACCCGTGTCTGAAGAAGTTT CCAGCAACAAGTTTTGCTGGACCAGCCAGGCCCAGACACCCATGATTTCCAGAATAGTCA TGATCCCTCCATGGCCACCGGCCTCAACCCCTAGCCTTCCCCGAGAGATGGAGCACTTGG GTTAGCAATATATATATATAATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTTTCAGCGCATCTGACTGTGAGGGCCAAGACGTCGTATATCTGCTGCGGGAAGCCAT CAAGCGCAGACAGGCAGTGAAGCTGAATGTGGTTGCTATTGTCAATGACACGGTGGGGAC CATGATGTCCTGTGGCTATGAGAATCCCCACTGCGAGGTCGGCCTTATTGTTGGAACTGG CACCAATGCCTGCTACATGGAGGAGCTCCGGAATGTGGCAAGTGTACCTGGGGACTCAGG CCACATGTGCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTCTCTAGGCATGCT CAGCACCTACTTTGATGAAAGGGTGGATCAGGCTTCCATCAACCCCGGCAGGCAGAGGTT TGAGAAGATGATCAGTGGCATGTACCTGGGGGAGATTGTCCGCCACATACTCCTGCATCT GACCAGCCGTGGAGTTCTCTTCCGGGGCCAGCAGATCCAGTGCCTCCAGACCAGGGACAT CTTCAAGACCAAGTTTCTCTCTCAGATTGAAAGCGACAGCCTGGCTCTGAGGCAGGTCCG AGCCATCCTGGAGGATCTGGGGCTGCCCCTGACCTCAGATGATGCCCTGATGGTCCTGGA GGTGTGCCAGGCTGTGTCCAGGCGGGCCGCCCAGCTTTGTGGGGCAGGTGTGGCTGCTGT GGTGGAGAAGATCCGTGAGAACCGGGGCCTGGAAAAGCTGACCGTGTCTGTGGGGGTGGA TGGGACCCTCTACAAGCTACATCCCCACTTCTCCAGGCTGGTGGAAGAAACAGTGCAGGA GCTGGCCCCTTGCTGTGAGGTCACCTTTCTGCAATCAAAGGACGGGTCTGGCAAAGGTGC AGCCCTGGTCACCGCTGTTGCCTGCCGCCTTGCCCAGATGACCCGTGTCTGAAGAAGTTT CCAGCAACAAGTTTTGCTGGACCAGCCAGGCCCAGACACCCATGATTTCCAGAATAGTCA TGATCCCTCCATGGCCACCGGCCTCAACCCCTAGCCTTCCCCGAGAGATGGAGCACTTGG GTTAGCAATATATATATATAATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 71-174, - strand, RNAz p=0.506325 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 71-174, - strand, RNAz p=0.506325 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 71-174, gnl|bosTau2|chr7 (26107759-26107656) | |
| 71-174, gnl|canFam2|chr4 (39677684-39677571) | |
| 71-174, gnl|danRer3|chr13 (26580779-26580892) | |
| 71-174, gnl|dasNov1|scaffold_176186 (3785-3672) | |
| 71-174, gnl|echTel1|scaffold_306390 (10232-10345) | |
| 71-174, gnl|fr1|chrUn (145076445-145076332) | |
| 71-174, gnl|galGal2|chr6 (10196285-10196182) | |
| 71-174, gnl|hg17|chr5 (176243376-176243489) | |
| 71-174, gnl|Hg17|chr5 (176243479-176243376) | |
| 71-174, gnl|loxAfr1|scaffold_4495 (49522-49418) | |
| 71-174, gnl|mm7|chr13 (54091064-54091177) | |
| 71-174, gnl|Mm7|chr13 (54091167-54091064) | |
| 71-174, gnl|monDom2|scaffold_6 (18130188-18130075) | |
| 71-174, gnl|oryCun1|scaffold_143105 (9002-9115) | |
| 71-174, gnl|panTro1|chr4 (183701034-183701147) | |
| 71-174, gnl|rheMac2|chr6 (173376237-173376350) | |
| 71-174, gnl|rn3|chr17 (15666351-15666238) | |
| 71-174, gnl|tetNig1|chrUn_random (88847807-88847694) | |
| 71-174, gnl|xenTro1|scaffold_235 (785323-785433) | |
| 356-513, gnl|bosTau2|chr11 (8327470-8327313) | |
| 356-513, gnl|canFam2|chr17 (51362342-51362174) | |
| 356-513, gnl|danRer3|chr5 (4719187-4719351) | |
| 356-513, gnl|dasNov1|scaffold_78010 (7457-7621) | |
| 356-513, gnl|echTel1|scaffold_308178 (359-191) | |
| 356-513, gnl|fr1|chrUn (145076800-145076967) | |
| 356-513, gnl|galGal2|chrUn (83030223-83030056) | |
| 356-513, gnl|hg17|chr2 (75026679-75026847) | |
| 356-513, gnl|Hg17|chr2 (75026683-75026840) | |
| 356-513, gnl|loxAfr1|scaffold_4495 (51038-51206) | |
| 356-513, gnl|mm7|chr6 (82755259-82755091) | |
| 356-513, gnl|Mm7|chr6 (82755253-82755096) | |
| 356-513, gnl|monDom2|scaffold_1 (92751653-92751474) | |
| 356-513, gnl|oryCun1|scaffold_200171 (695-527) | |
| 356-513, gnl|panTro1|chr12 (77432346-77432514) | |
| 356-513, gnl|rheMac2|chr13 (75132405-75132573) | |
| 356-513, gnl|rn3|chr4 (117173459-117173291) | |
| 356-513, gnl|tetNig1|chrUn_random (88848110-88848275) | |
| 356-513, gnl|xenTro1|scaffold_110 (1962245-1962413) | |
| 748-925, gnl|bosTau2|chr7 (26104752-26104575) | |
| 748-925, gnl|Hg17|chr5 (176240824-176240632) | |
| 748-925, gnl|Mm7|chr13 (54088705-54088524) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-174, gnl|bosTau2|chr7 (26107759-26107656) | |
| 71-174, gnl|canFam2|chr4 (39677684-39677571) | |
| 71-174, gnl|danRer3|chr13 (26580779-26580892) | |
| 71-174, gnl|dasNov1|scaffold_176186 (3785-3672) | |
| 71-174, gnl|echTel1|scaffold_306390 (10232-10345) | |
| 71-174, gnl|fr1|chrUn (145076445-145076332) | |
| 71-174, gnl|galGal2|chr6 (10196285-10196182) | |
| 71-174, gnl|hg17|chr5 (176243376-176243489) | |
| 71-174, gnl|Hg17|chr5 (176243479-176243376) | |
| 71-174, gnl|loxAfr1|scaffold_4495 (49522-49418) | |
| 71-174, gnl|mm7|chr13 (54091064-54091177) | |
| 71-174, gnl|Mm7|chr13 (54091167-54091064) | |
| 71-174, gnl|monDom2|scaffold_6 (18130188-18130075) | |
| 71-174, gnl|oryCun1|scaffold_143105 (9002-9115) | |
| 71-174, gnl|panTro1|chr4 (183701034-183701147) | |
| 71-174, gnl|rheMac2|chr6 (173376237-173376350) | |
| 71-174, gnl|rn3|chr17 (15666351-15666238) | |
| 71-174, gnl|tetNig1|chrUn_random (88847807-88847694) | |
| 71-174, gnl|xenTro1|scaffold_235 (785323-785433) | |
| 356-513, gnl|bosTau2|chr11 (8327470-8327313) | |
| 356-513, gnl|canFam2|chr17 (51362342-51362174) | |
| 356-513, gnl|danRer3|chr5 (4719187-4719351) | |
| 356-513, gnl|dasNov1|scaffold_78010 (7457-7621) | |
| 356-513, gnl|echTel1|scaffold_308178 (359-191) | |
| 356-513, gnl|fr1|chrUn (145076800-145076967) | |
| 356-513, gnl|galGal2|chrUn (83030223-83030056) | |
| 356-513, gnl|hg17|chr2 (75026679-75026847) | |
| 356-513, gnl|Hg17|chr2 (75026683-75026840) | |
| 356-513, gnl|loxAfr1|scaffold_4495 (51038-51206) | |
| 356-513, gnl|mm7|chr6 (82755259-82755091) | |
| 356-513, gnl|Mm7|chr6 (82755253-82755096) | |
| 356-513, gnl|monDom2|scaffold_1 (92751653-92751474) | |
| 356-513, gnl|oryCun1|scaffold_200171 (695-527) | |
| 356-513, gnl|panTro1|chr12 (77432346-77432514) | |
| 356-513, gnl|rheMac2|chr13 (75132405-75132573) | |
| 356-513, gnl|rn3|chr4 (117173459-117173291) | |
| 356-513, gnl|tetNig1|chrUn_random (88848110-88848275) | |
| 356-513, gnl|xenTro1|scaffold_110 (1962245-1962413) | |
| 748-925, gnl|bosTau2|chr7 (26104752-26104575) | |
| 748-925, gnl|Hg17|chr5 (176240824-176240632) | |
| 748-925, gnl|Mm7|chr13 (54088705-54088524) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| nbm (0.297974) | |
| nca (0.273748) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| clu (0.119646) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) | |
| nca (0.273748) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| clu (0.119646) |