Non-Coding RNA Search

Ss1.1-Pig4-TMW8036E08.3

Sequence:


               
               GCAGGCGGCCCCGGAGCGAGCTCCTAAAGGCTCCCGCCCTCGTGGCGGACTCCCCCTCTG
GAATGGGGCCTCTGTTCATGAACGGACTGATCGCCGGGATGGACCTGGTCGGACTTCAGA
ACATGAGAAACATGCCAGGCATCCCCCTCACGGGGCTGGTGGGGTTCCCGGCTGGCTTTG
CCGCCATGCCCACGGGCGAGGAGGTCAAGGGCACGTTGAGCATGCTGCCCATGGTGCTGC
CGGGAATGGCCACCGTGCCCCAGATGTTTGGGGTCGGGGGGCTCCTCAATGCCCCCATGG
CCACCACCTGCACTTCGACTGCACCCGCACCTCTGTCAAGCACAACAAAGAGTGGCACGT
CGGTGGCCGAAAAGACTGCAGAAGACAAGCCCAGCGGCCACGATGTAAAAACGGACACGT
TAGCTGACGACAAGCCTGGTCCTAGTCCGTTTTCCGACCAGTCCGAACCTGCAATAACTG
CGAGCAGTCCTGTGGCTTTTAACCCGTTTCTCATCCCAGGAATGTCCCCCGGACTCATTT
ACCCATCTATGTTTCTCTCCCCTGGCATGGGCATGGCTCTGCCAGCCATGCAGCAGGCCA
GACACTCTGAGGTGGTGGGTCTGGAGAGCCAGAAGAGGAAGAGGAAGAGAACAAAGGGGG
ACAATGCGAGCCCCAACCCGGAGCCTGCCCCCGGGGCCGAGAGGGAGCCGGGCAGTGACC
AGAGCTGCCCCGAACCCAGGGCCTCTGTGCCCCCAGATAGAGACCACGTGGCACAGGCCA
GGGAAGGGGGCCCCCAAGACTCAAATGGCGACACCAATTAGAACTTTTTCATTGAAGAAA
TTATTGTGACTTGTAAGTTTCTTATCCCATAAAGGTTTGTTACTTCCCTCACTTCACTGT
CATAAGAACCTGTGTTTCCATGAGTAATATTACCTGCCTGATTTCCTGTCTGAGAACTGT
GGTAACAGATGTTCATAGCCACGTCATCAGCTAAGTGTCGTTGACCTAGTGTAGGAGGCA
CAGAGTCCTCACTCTGTTATCCAGTCCTTCATTCCAGCAGCCGTAGTTAGTACAGGCGTG
GGGACACGCCCTACCCCTTCTCTTCCAAGTTTCCCACTTATTTGAGGAGGAAAAATGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCGGCCCCGGAGCGAGCTCCTAAAGGCTCCCGCCCTCGTGGCGGACTCCCCCTCTG
GAATGGGGCCTCTGTTCATGAACGGACTGATCGCCGGGATGGACCTGGTCGGACTTCAGA
ACATGAGAAACATGCCAGGCATCCCCCTCACGGGGCTGGTGGGGTTCCCGGCTGGCTTTG
CCGCCATGCCCACGGGCGAGGAGGTCAAGGGCACGTTGAGCATGCTGCCCATGGTGCTGC
CGGGAATGGCCACCGTGCCCCAGATGTTTGGGGTCGGGGGGCTCCTCAATGCCCCCATGG
CCACCACCTGCACTTCGACTGCACCCGCACCTCTGTCAAGCACAACAAAGAGTGGCACGT
CGGTGGCCGAAAAGACTGCAGAAGACAAGCCCAGCGGCCACGATGTAAAAACGGACACGT
TAGCTGACGACAAGCCTGGTCCTAGTCCGTTTTCCGACCAGTCCGAACCTGCAATAACTG
CGAGCAGTCCTGTGGCTTTTAACCCGTTTCTCATCCCAGGAATGTCCCCCGGACTCATTT
ACCCATCTATGTTTCTCTCCCCTGGCATGGGCATGGCTCTGCCAGCCATGCAGCAGGCCA
GACACTCTGAGGTGGTGGGTCTGGAGAGCCAGAAGAGGAAGAGGAAGAGAACAAAGGGGG
ACAATGCGAGCCCCAACCCGGAGCCTGCCCCCGGGGCCGAGAGGGAGCCGGGCAGTGACC
AGAGCTGCCCCGAACCCAGGGCCTCTGTGCCCCCAGATAGAGACCACGTGGCACAGGCCA
GGGAAGGGGGCCCCCAAGACTCAAATGGCGACACCAATTAGAACTTTTTCATTGAAGAAA
TTATTGTGACTTGTAAGTTTCTTATCCCATAAAGGTTTGTTACTTCCCTCACTTCACTGT
CATAAGAACCTGTGTTTCCATGAGTAATATTACCTGCCTGATTTCCTGTCTGAGAACTGT
GGTAACAGATGTTCATAGCCACGTCATCAGCTAAGTGTCGTTGACCTAGTGTAGGAGGCA
CAGAGTCCTCACTCTGTTATCCAGTCCTTCATTCCAGCAGCCGTAGTTAGTACAGGCGTG
GGGACACGCCCTACCCCTTCTCTTCCAAGTTTCCCACTTATTTGAGGAGGAAAAATGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878995|ref|XP_581123.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878995|ref|XP_581123.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-320, - strand, RNAz p=0.716197
               

               
               478-797, - strand, RNAz p=0.981807

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-320, - strand, RNAz p=0.716197
               

               
               478-797, - strand, RNAz p=0.981807

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK124874, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK124874, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1135, gnl|bosTau2|chr13 (51606974-51605816)
               

               
               1-1135, gnl|Hg17|chr20 (39467467-39466325)
               

               
               1-1135, gnl|Mm7|chr2 (160691001-160689874)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1135, gnl|bosTau2|chr13 (51606974-51605816)
               

               
               1-1135, gnl|Hg17|chr20 (39467467-39466325)
               

               
               1-1135, gnl|Mm7|chr2 (160691001-160689874)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	121-320, - strand, RNAz p=0.716197
	478-797, - strand, RNAz p=0.981807

	1-1135, gnl\|bosTau2\|chr13 (51606974-51605816)
	1-1135, gnl\|Hg17\|chr20 (39467467-39466325)
	1-1135, gnl\|Mm7\|chr2 (160691001-160689874)