Non-Coding RNA Search

Ss1.1-Pig4-TMW8036E19.3.5

Sequence:


               
               TGGGGGTAGGGGTAGGGAGGTAAGCTAGATTGCGGCAGTGGGGTGGTTTTTTCTTTCTCT
TTAATTGTTTTCCCCTTCTTTATCCTTCAGAGCTTCACCCCCCAGCCTGAGTTTTTAATT
CCTTCTAGGAACTTGGATTACTGGGGCAAGAATGTTTAAAGCTCCCTATAGCTCCTACTT
GGAGAGAAGTGAGCCATCTACTGGTCAGGAAGCCCTTTTAGCGGACTCACACAGGCAGCG
TTCCCCACGATGGTGGGAGGAAACTATTCCTGGAGGAAGCATGGAATAGTACCCCAGCTG
CCTGGGGAACTGCCCTGAGGCTGGAAATCGGTTCTGAAGCTTGTTCGCTGTGTCTTTGTG
TTGCACGTTTCTTTAAAGTCGAGTGGCAGAAGCCCCTGCCCTGTACTTCACAGTGAAACA
GATCACACTTAGTCTTACTCTCCTCCCTCCTCCCCAGTTTTTACTTTGCTGTTTCATTGC
TGACAGCATTCAACAGCAGTACACCCCATCTTTAGTATATCCTAAGAAACACTAATCCTA
GGTTATTAGCTGAAATATTTTTGTTCTGAGTAACATTGTTACTGGGTCAAAAGACAGGTC
AGGAACCCTAGCCTGTAGTTTCCTAAAGTTGCCAGGTTAGGCACGGGGAGAGTTCGTGGG
TGTTGGCTGAGCCTGGCTGGGAGAAGGGCAGCAGTGTGAGTTCTGTCCTTTCTGGGATGA
CCCCTGAAGGCTTCAAGGGGGCTCCCCAACTCCTGAGTAGCTTGGCCCGTTCATTGCTGT
GGGAATGGGGATTGGGTGGTTAAGACAGGGAGTGTTGCTCTCTATTAGTGGGCAAGTTCT
CCGGGCTCTCTCCTTTGCTCCCATGCCCTCCCTGTGCCCTCTCCTTGCATGCCCCGGGGG
GATCAGGGATCCTCACCCTCCTGAGGCCCAGCCGGGGAAGAATCAACATGGCAGCTTCAA
AATCAGTTGAAGCTACTGCTTGCCCAGCCTCTTCCACCCCAGCCGTGTCTGTGAGCCCAG
GTCTGGTGTGACTGCTACAAGTCCCCTACTTGAAGCAGGGGGACCCTGGAAGTGTATTGG
GCTGGGGTGGGATCTTCCCTTCCCACAGTGCACTGAGCAGTGGAGGTGGTAAGGGGTGAG
GGAGCCATGCTGCTGAATTCTGGTTGGCATTCCCCCCTTGTACGAGATGGGGAGGCTGGC
AGTGGGCCAGCCTCTGCTCTGTTTGGTTGTGAGATAAACCTGGAGGAGAAGCACAGTTAC
CCGTTGAATTATTTGAGCAAAGAACTACTGTAAATAACTTTTGTTCTTGTCTTTTGTCAA
ATAAAGTTGTTTTTTTGTTTTTGTTTTTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGGTAGGGGTAGGGAGGTAAGCTAGATTGCGGCAGTGGGGTGGTTTTTTCTTTCTCT
TTAATTGTTTTCCCCTTCTTTATCCTTCAGAGCTTCACCCCCCAGCCTGAGTTTTTAATT
CCTTCTAGGAACTTGGATTACTGGGGCAAGAATGTTTAAAGCTCCCTATAGCTCCTACTT
GGAGAGAAGTGAGCCATCTACTGGTCAGGAAGCCCTTTTAGCGGACTCACACAGGCAGCG
TTCCCCACGATGGTGGGAGGAAACTATTCCTGGAGGAAGCATGGAATAGTACCCCAGCTG
CCTGGGGAACTGCCCTGAGGCTGGAAATCGGTTCTGAAGCTTGTTCGCTGTGTCTTTGTG
TTGCACGTTTCTTTAAAGTCGAGTGGCAGAAGCCCCTGCCCTGTACTTCACAGTGAAACA
GATCACACTTAGTCTTACTCTCCTCCCTCCTCCCCAGTTTTTACTTTGCTGTTTCATTGC
TGACAGCATTCAACAGCAGTACACCCCATCTTTAGTATATCCTAAGAAACACTAATCCTA
GGTTATTAGCTGAAATATTTTTGTTCTGAGTAACATTGTTACTGGGTCAAAAGACAGGTC
AGGAACCCTAGCCTGTAGTTTCCTAAAGTTGCCAGGTTAGGCACGGGGAGAGTTCGTGGG
TGTTGGCTGAGCCTGGCTGGGAGAAGGGCAGCAGTGTGAGTTCTGTCCTTTCTGGGATGA
CCCCTGAAGGCTTCAAGGGGGCTCCCCAACTCCTGAGTAGCTTGGCCCGTTCATTGCTGT
GGGAATGGGGATTGGGTGGTTAAGACAGGGAGTGTTGCTCTCTATTAGTGGGCAAGTTCT
CCGGGCTCTCTCCTTTGCTCCCATGCCCTCCCTGTGCCCTCTCCTTGCATGCCCCGGGGG
GATCAGGGATCCTCACCCTCCTGAGGCCCAGCCGGGGAAGAATCAACATGGCAGCTTCAA
AATCAGTTGAAGCTACTGCTTGCCCAGCCTCTTCCACCCCAGCCGTGTCTGTGAGCCCAG
GTCTGGTGTGACTGCTACAAGTCCCCTACTTGAAGCAGGGGGACCCTGGAAGTGTATTGG
GCTGGGGTGGGATCTTCCCTTCCCACAGTGCACTGAGCAGTGGAGGTGGTAAGGGGTGAG
GGAGCCATGCTGCTGAATTCTGGTTGGCATTCCCCCCTTGTACGAGATGGGGAGGCTGGC
AGTGGGCCAGCCTCTGCTCTGTTTGGTTGTGAGATAAACCTGGAGGAGAAGCACAGTTAC
CCGTTGAATTATTTGAGCAAAGAACTACTGTAAATAACTTTTGTTCTTGTCTTTTGTCAA
ATAAAGTTGTTTTTTTGTTTTTGTTTTTCAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               863-1133, - strand, RNAz p=0.996029

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               863-1133, - strand, RNAz p=0.996029

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               532-1348, gnl|bosTau2|chr13 (44728611-44729426)
               

               
               532-1348, gnl|Hg17|chr20 (34654945-34655750)
               

               
               532-1348, gnl|Mm7|chr2 (156595718-156596446)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               532-1348, gnl|bosTau2|chr13 (44728611-44729426)
               

               
               532-1348, gnl|Hg17|chr20 (34654945-34655750)
               

               
               532-1348, gnl|Mm7|chr2 (156595718-156596446)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               ill (0.175593)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	532-1348, gnl\|bosTau2\|chr13 (44728611-44729426)
	532-1348, gnl\|Hg17\|chr20 (34654945-34655750)
	532-1348, gnl\|Mm7\|chr2 (156595718-156596446)

	fce (0.271592)
	ill (0.175593)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)
	pgl (0.118483)