Non-Coding RNA Search

Ss1.1-Pig4-TMW8036E20.5

Sequence:


               
               AAAGATGGCGGCGCCCGTGAGACGGACTATGTTAAGAGTGGTGAGGGGCTGGCGACGGTT
TGAGGGTCCTTGGGCCCATAGTCTGGGTTCTCGCAACCTGGCCCTTGCGGTCGCACCTTC
GAGCAGTAGCTCTCCATGGCGCCTGTTGGGCGCGTTGTGCCTGCAGAGGCCACCGCTGGT
CACAAAGCCGCTGACCCCATTGCAGGAAGAGATGGCGGATCTGCTACAGCAGATTGAGAT
AGAGAGAAGCCTGTATTCAGACCATGAGCTTCGTGCTTTGGATGAAGCCCAACAACTGGC
AAAGAAGAAAAGTGACCTTTATGAAGAGGAAGATGAGCAGAATATATTGCTGGCACAGGA
TTTGGAAGACATGTGGGAGCAGAAATTCCTACACTTCAAACTTGGAGCTCGACTAACAGA
AGCGGATAAAAAGGATGACCGAACCTCACTACACCGGAAGCTTGATAGGAACCTTATTCT
GTTGGTCAGAGAGAAGCTTGGAGACCAGGATATTTGGATGCTGCCCCAGTCAGATTGGCA
GCCAGGGGAGACCCTCCGCCAAACAGCTGAGCGAACCCTGGCCACACTTTCAGAAAACAA
CATGGAAGCCAAGTTCCTGGGAAATGCACCCTGTGGCCACTACAAGTTCAAGTTCCCCCA
GGCAATGCGGACAGAAACCAGTCTCGGGGCCAAAGTATTCTTCTTCAAAGCTCTACTGTT
AACTGGAGACTTTTCCCAGGCCGGGAAGAAGGGCCATCATGTGTGGGTCAGTAAGGAGGA
GCTGGGTGACTATTTGAAACCAAAATACCTGGCCCAGGTTAGGAGGTTTCTTTTGGACCT
CTGATAGATTGAGCTGCCTGTGGACAACGCTCGGGCAGGTCTGTGACTGGACTTCAAGGA
CGTCATGGGGTTATCTCATCTTTGTAGGGAATATCAAGCAGCAAACTATATTCTGAGAAA
TAAACACGTTTGTCATCGTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGATGGCGGCGCCCGTGAGACGGACTATGTTAAGAGTGGTGAGGGGCTGGCGACGGTT
TGAGGGTCCTTGGGCCCATAGTCTGGGTTCTCGCAACCTGGCCCTTGCGGTCGCACCTTC
GAGCAGTAGCTCTCCATGGCGCCTGTTGGGCGCGTTGTGCCTGCAGAGGCCACCGCTGGT
CACAAAGCCGCTGACCCCATTGCAGGAAGAGATGGCGGATCTGCTACAGCAGATTGAGAT
AGAGAGAAGCCTGTATTCAGACCATGAGCTTCGTGCTTTGGATGAAGCCCAACAACTGGC
AAAGAAGAAAAGTGACCTTTATGAAGAGGAAGATGAGCAGAATATATTGCTGGCACAGGA
TTTGGAAGACATGTGGGAGCAGAAATTCCTACACTTCAAACTTGGAGCTCGACTAACAGA
AGCGGATAAAAAGGATGACCGAACCTCACTACACCGGAAGCTTGATAGGAACCTTATTCT
GTTGGTCAGAGAGAAGCTTGGAGACCAGGATATTTGGATGCTGCCCCAGTCAGATTGGCA
GCCAGGGGAGACCCTCCGCCAAACAGCTGAGCGAACCCTGGCCACACTTTCAGAAAACAA
CATGGAAGCCAAGTTCCTGGGAAATGCACCCTGTGGCCACTACAAGTTCAAGTTCCCCCA
GGCAATGCGGACAGAAACCAGTCTCGGGGCCAAAGTATTCTTCTTCAAAGCTCTACTGTT
AACTGGAGACTTTTCCCAGGCCGGGAAGAAGGGCCATCATGTGTGGGTCAGTAAGGAGGA
GCTGGGTGACTATTTGAAACCAAAATACCTGGCCCAGGTTAGGAGGTTTCTTTTGGACCT
CTGATAGATTGAGCTGCCTGTGGACAACGCTCGGGCAGGTCTGTGACTGGACTTCAAGGA
CGTCATGGGGTTATCTCATCTTTGTAGGGAATATCAAGCAGCAAACTATATTCTGAGAAA
TAAACACGTTTGTCATCGTGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11275665|gb|AAG33698.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11275665|gb|AAG33698.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               790-897, - strand, RNAz p=0.842005

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               790-897, - strand, RNAz p=0.842005

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               230-419, gnl|bosTau2|chr21 (14562355-14562166)
               

               
               230-419, gnl|Hg17|chr15 (86810011-86809822)
               

               
               230-419, gnl|Mm7|chr7 (74644786-74644597)
               


               
               590-980, gnl|bosTau2|chr21 (14555147-14554747)
               

               
               590-980, gnl|Hg17|chr15 (86804102-86803711)
               

               
               590-980, gnl|Mm7|chr7 (74638926-74638543)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-419, gnl|bosTau2|chr21 (14562355-14562166)
               

               
               230-419, gnl|Hg17|chr15 (86810011-86809822)
               

               
               230-419, gnl|Mm7|chr7 (74644786-74644597)
               


               
               590-980, gnl|bosTau2|chr21 (14555147-14554747)
               

               
               590-980, gnl|Hg17|chr15 (86804102-86803711)
               

               
               590-980, gnl|Mm7|chr7 (74638926-74638543)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sme (0.305437)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	230-419, gnl\|bosTau2\|chr21 (14562355-14562166)
	230-419, gnl\|Hg17\|chr15 (86810011-86809822)
	230-419, gnl\|Mm7\|chr7 (74644786-74644597)

	590-980, gnl\|bosTau2\|chr21 (14555147-14554747)
	590-980, gnl\|Hg17\|chr15 (86804102-86803711)
	590-980, gnl\|Mm7\|chr7 (74638926-74638543)

	sme (0.305437)
	tes (0.207814)
	fbs (0.175346)
	fco (0.157208)
	tbr (0.154178)
	cli (0.152812)
	spl (0.143184)
	che (0.136314)
	eru (0.120048)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)