Ss1.1-Pig4-TMW8036E21.3
|
AAACAGAAGCCATTCTGAGTGTTTCAGTAGAGGGAATTTAAGAGAAATTGACATACATAG
ATGATGAAAGAGAAGATCAATAAAAGGAAGCTCTTGCCACCTAAGGCTTTGAGGGGGTGT
GATTCTTTGAGTCCAGAGGCTGGGGTTGTCCACAGGAGCTGGAACCATGGCAGGGGCTGG
CTGGTGGAGCTAGTGCCCCTTAGGTGTTGTAGGAAATGGAACTGTGCCAGGGACACAGCC
ACTGCCCCAGATGGGGCAACACCGGATGACTCAGACATGGAAATATACCCTGGTTTCCCC
TCTCCTTCTGGCCTTTAGTCTTTGTCCAGGACCTTGGCCCTTTCAGCCCCAGCTGGGAGG
GATCTGGCAAGGGCCCTGGGAAGTCTGGTTTCCTGCAGTACAGAGCACAGCAAGGGGCAG
TGAGTCAGGGGAGGAACAGGAAATAGGCCGGGCTTACAAAGTGAAGAGAAGGAATCCTTT
TCCCTGTGTTCAGTGATTCATCCATTCATTCCTTTATTCATTGAGTTGTCAGATAATCTG
TGTATTGCCGACCATGTGCCAAATAATTTGTTTCAGCTGGAAGATATATCTGGAACTTTT
TAGGTTATTCCAAGCCTTATTCTGGAGTAAAATTTTTGTTATCTCTAGTTCTCTAAATTG
GGGAGGGTTGATGGCGAAGATATTTGCACTGTGTTCCCAAAGTGGTGGTATCTTTTGAAT
TCCTGATAAATTACTGTTTTATTCTGCCTAATAACTTGTTAACAAACATTTATATTTATT
GATTAAAATGCGATTGCTTAATTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAACAGAAGCCATTCTGAGTGTTTCAGTAGAGGGAATTTAAGAGAAATTGACATACATAG
ATGATGAAAGAGAAGATCAATAAAAGGAAGCTCTTGCCACCTAAGGCTTTGAGGGGGTGT
GATTCTTTGAGTCCAGAGGCTGGGGTTGTCCACAGGAGCTGGAACCATGGCAGGGGCTGG
CTGGTGGAGCTAGTGCCCCTTAGGTGTTGTAGGAAATGGAACTGTGCCAGGGACACAGCC
ACTGCCCCAGATGGGGCAACACCGGATGACTCAGACATGGAAATATACCCTGGTTTCCCC
TCTCCTTCTGGCCTTTAGTCTTTGTCCAGGACCTTGGCCCTTTCAGCCCCAGCTGGGAGG
GATCTGGCAAGGGCCCTGGGAAGTCTGGTTTCCTGCAGTACAGAGCACAGCAAGGGGCAG
TGAGTCAGGGGAGGAACAGGAAATAGGCCGGGCTTACAAAGTGAAGAGAAGGAATCCTTT
TCCCTGTGTTCAGTGATTCATCCATTCATTCCTTTATTCATTGAGTTGTCAGATAATCTG
TGTATTGCCGACCATGTGCCAAATAATTTGTTTCAGCTGGAAGATATATCTGGAACTTTT
TAGGTTATTCCAAGCCTTATTCTGGAGTAAAATTTTTGTTATCTCTAGTTCTCTAAATTG
GGGAGGGTTGATGGCGAAGATATTTGCACTGTGTTCCCAAAGTGGTGGTATCTTTTGAAT
TCCTGATAAATTACTGTTTTATTCTGCCTAATAACTTGTTAACAAACATTTATATTTATT
GATTAAAATGCGATTGCTTAATTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
94-795, gnl|bosTau2|chr26 (22842966-22842260) |
|
94-795, gnl|canFam2|chr28 (27629715-27630167) |
|
94-795, gnl|dasNov1|scaffold_47779 (6228-6681) |
|
94-795, gnl|echTel1|scaffold_286426 (66752-66355) |
|
94-795, gnl|hg17|chr10 (115479973-115480417) |
|
94-795, gnl|Hg17|chr10 (115479972-115480645) |
|
94-795, gnl|mm7|chr19 (56357267-56357714) |
|
94-795, gnl|Mm7|chr19 (56357260-56357929) |
|
94-795, gnl|oryCun1|scaffold_211247 (39539-40009) |
|
94-795, gnl|panTro1|chr8 (117634015-117634459) |
|
94-795, gnl|rheMac2|chr9 (113392576-113393021) |
|
94-795, gnl|rn3|chr1 (262931966-262932416) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
94-795, gnl|bosTau2|chr26 (22842966-22842260) |
|
94-795, gnl|canFam2|chr28 (27629715-27630167) |
|
94-795, gnl|dasNov1|scaffold_47779 (6228-6681) |
|
94-795, gnl|echTel1|scaffold_286426 (66752-66355) |
|
94-795, gnl|hg17|chr10 (115479973-115480417) |
|
94-795, gnl|Hg17|chr10 (115479972-115480645) |
|
94-795, gnl|mm7|chr19 (56357267-56357714) |
|
94-795, gnl|Mm7|chr19 (56357260-56357929) |
|
94-795, gnl|oryCun1|scaffold_211247 (39539-40009) |
|
94-795, gnl|panTro1|chr8 (117634015-117634459) |
|
94-795, gnl|rheMac2|chr9 (113392576-113393021) |
|
94-795, gnl|rn3|chr1 (262931966-262932416) |
|
cje (0.660939) |
|
ill (0.351185) |
|
duo (0.345602) |
|
rec (0.17307) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ova (0.129132) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
cje (0.660939) |
|
ill (0.351185) |
|
duo (0.345602) |
|
rec (0.17307) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ova (0.129132) |
|
pgl (0.118483) |
|
jej (0.0989218) |
