Ss1.1-Pig4-TMW8036F13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCACTTCTGTGTCTTGAAGACAACAATGCCAAAGAAAGCAAAGCCTGCAGGGAATGGG AAGGAAGAGGAGCCTGTTCCTTGTAAGCAGGTGAAGGTGGAGGCCGCTGGATGAGCTCTG GAGGATCCAAGAGAAGCTGGAATGCTACTTTGGCTCCTTGGTTGGCTCGAATGTGTACCT AACCCCTGCGGGATCTCAGGGCCTGCCGCCCCACTATGATGATGTTGAGGTTTTCATCCT GCAGCTGGAAGGAGAGAAACACTGGCGCCTCTACCAGCCGACGGTGCCCCTGGCGCGGGA GTACAGTGTGGAGGCTGAGAACAGGATTGGGAAGCCAGCATACGAGTTCATGCTGAAGCC AGGAGACTTGCTGTACTTTCCTAGAGGAACGATTCATCAGGCAGACACTCCTCCAGGGCT GGCCCACTCCACTCACCTGACCATCAGCACCTATCAGAGCAGTTCATGGGGAGATTTCCT TTTGGATACCATTTCGGGGCTTGTGTTCGATACGGCAAAGGCAGATGTGGAATTCCGGGC TGGCATACCCCGGCAGCTGCTCCTGCAGGTGGAAACCACAGATGTTGCGACACGATTAAG TGGCTTTCTGAGGATGCTTGCAGACCGGCTGGAGGGCACCAAAGAACTGTTCTCAACAGA CATGAAGAAGGATTTTGCTTTAAACAGACTCCCACCTTATTATGTGGGAGATGGAGCAGA GCTTTCAACGCCAGATGGAGAGTTACCGAGGTTGGACAGCACAGTGAGACTGCAGTTTAG AGACTATGTTGTCCTCACTGTAGGACCCGATCAAGATCCATCAGATGAATCGCAAGAAAA GATGGTTTACGTCTACCATTCTTTAAAGAACAGGAGAGAGACACACATGATGGGAAATGA GGAGGAAACAGAGTCTCATGGACTTCGCTTTCCTTTATCGCATCTGGATGCACTGAAGCA AATTTGGAATAGTTCAGCTATTTCTGTCAAGGACCTAAAACTTACTACAGATGAGGAAAA GCAAAGCCTAGTATTATCCCTCTGGACAGAGTGTTTAATCCAAGTAATCTAGTGTCTTTC TTTTTTAATGTGTTTATATAAAATAGGCACTTGGTTCTACAAAGATTTACGTGCCAGGGA GCTCCTATTGCTTTGAGCCAAGCACAAGACAAATGTAACTTTCCTTACCTGTGTATCTAA TGATATGAGACCTACCTGTTACAGGTGTTCAGTTGGTAATATGTACTAACAAAGGTATGT GGAAGAAAGAAGAGCAAACTACTAAATGTCCCAGGAAGTGACAAAACCATACTTTCTGAC AAGCTTATTTAATCCAGTGTGGTAGAAAAGGCACAGTTCTAATAAATGTATCATTTAAAT TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCACTTCTGTGTCTTGAAGACAACAATGCCAAAGAAAGCAAAGCCTGCAGGGAATGGG AAGGAAGAGGAGCCTGTTCCTTGTAAGCAGGTGAAGGTGGAGGCCGCTGGATGAGCTCTG GAGGATCCAAGAGAAGCTGGAATGCTACTTTGGCTCCTTGGTTGGCTCGAATGTGTACCT AACCCCTGCGGGATCTCAGGGCCTGCCGCCCCACTATGATGATGTTGAGGTTTTCATCCT GCAGCTGGAAGGAGAGAAACACTGGCGCCTCTACCAGCCGACGGTGCCCCTGGCGCGGGA GTACAGTGTGGAGGCTGAGAACAGGATTGGGAAGCCAGCATACGAGTTCATGCTGAAGCC AGGAGACTTGCTGTACTTTCCTAGAGGAACGATTCATCAGGCAGACACTCCTCCAGGGCT GGCCCACTCCACTCACCTGACCATCAGCACCTATCAGAGCAGTTCATGGGGAGATTTCCT TTTGGATACCATTTCGGGGCTTGTGTTCGATACGGCAAAGGCAGATGTGGAATTCCGGGC TGGCATACCCCGGCAGCTGCTCCTGCAGGTGGAAACCACAGATGTTGCGACACGATTAAG TGGCTTTCTGAGGATGCTTGCAGACCGGCTGGAGGGCACCAAAGAACTGTTCTCAACAGA CATGAAGAAGGATTTTGCTTTAAACAGACTCCCACCTTATTATGTGGGAGATGGAGCAGA GCTTTCAACGCCAGATGGAGAGTTACCGAGGTTGGACAGCACAGTGAGACTGCAGTTTAG AGACTATGTTGTCCTCACTGTAGGACCCGATCAAGATCCATCAGATGAATCGCAAGAAAA GATGGTTTACGTCTACCATTCTTTAAAGAACAGGAGAGAGACACACATGATGGGAAATGA GGAGGAAACAGAGTCTCATGGACTTCGCTTTCCTTTATCGCATCTGGATGCACTGAAGCA AATTTGGAATAGTTCAGCTATTTCTGTCAAGGACCTAAAACTTACTACAGATGAGGAAAA GCAAAGCCTAGTATTATCCCTCTGGACAGAGTGTTTAATCCAAGTAATCTAGTGTCTTTC TTTTTTAATGTGTTTATATAAAATAGGCACTTGGTTCTACAAAGATTTACGTGCCAGGGA GCTCCTATTGCTTTGAGCCAAGCACAAGACAAATGTAACTTTCCTTACCTGTGTATCTAA TGATATGAGACCTACCTGTTACAGGTGTTCAGTTGGTAATATGTACTAACAAAGGTATGT GGAAGAAAGAAGAGCAAACTACTAAATGTCCCAGGAAGTGACAAAACCATACTTTCTGAC AAGCTTATTTAATCCAGTGTGGTAGAAAAGGCACAGTTCTAATAAATGTATCATTTAAAT TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr1 (22122201-22122098) | |
| 1-107, gnl|Hg17|chr3 (99169156-99169048) | |
| 1-107, gnl|Mm7|chr16 (59411391-59411487) | |
| 228-358, gnl|bosTau2|chr1 (22115378-22115248) | |
| 228-358, gnl|canFam2|chr33 (7950025-7950177) | |
| 228-358, gnl|danRer3|chrNA (76444892-76444755) | |
| 228-358, gnl|dasNov1|scaffold_5567 (18423-18271) | |
| 228-358, gnl|echTel1|scaffold_278826 (11072-11218) | |
| 228-358, gnl|galGal2|chrUn (44266955-44267106) | |
| 228-358, gnl|hg17|chr3 (99160579-99160731) | |
| 228-358, gnl|Hg17|chr3 (99160715-99160585) | |
| 228-358, gnl|loxAfr1|scaffold_5675 (85413-85565) | |
| 228-358, gnl|mm7|chr16 (59416296-59416145) | |
| 228-358, gnl|Mm7|chr16 (59416160-59416290) | |
| 228-358, gnl|monDom2|scaffold_25 (18775525-18775679) | |
| 228-358, gnl|oryCun1|scaffold_210906 (51892-51738) | |
| 228-358, gnl|panTro1|chr2 (100321326-100321478) | |
| 228-358, gnl|rheMac2|chr2 (18325317-18325469) | |
| 228-358, gnl|rn3|chr11 (41695552-41695702) | |
| 228-358, gnl|xenTro1|scaffold_72 (14138-14277) | |
| 561-724, gnl|bosTau2|chr1 (22100353-22100190) | |
| 561-724, gnl|Hg17|chr3 (99151554-99151388) | |
| 561-724, gnl|Mm7|chr16 (59423294-59423460) | |
| 912-1378, gnl|bosTau2|chr1 (22096322-22095853) | |
| 912-1378, gnl|Hg17|chr3 (99146878-99146429) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr1 (22122201-22122098) | |
| 1-107, gnl|Hg17|chr3 (99169156-99169048) | |
| 1-107, gnl|Mm7|chr16 (59411391-59411487) | |
| 228-358, gnl|bosTau2|chr1 (22115378-22115248) | |
| 228-358, gnl|canFam2|chr33 (7950025-7950177) | |
| 228-358, gnl|danRer3|chrNA (76444892-76444755) | |
| 228-358, gnl|dasNov1|scaffold_5567 (18423-18271) | |
| 228-358, gnl|echTel1|scaffold_278826 (11072-11218) | |
| 228-358, gnl|galGal2|chrUn (44266955-44267106) | |
| 228-358, gnl|hg17|chr3 (99160579-99160731) | |
| 228-358, gnl|Hg17|chr3 (99160715-99160585) | |
| 228-358, gnl|loxAfr1|scaffold_5675 (85413-85565) | |
| 228-358, gnl|mm7|chr16 (59416296-59416145) | |
| 228-358, gnl|Mm7|chr16 (59416160-59416290) | |
| 228-358, gnl|monDom2|scaffold_25 (18775525-18775679) | |
| 228-358, gnl|oryCun1|scaffold_210906 (51892-51738) | |
| 228-358, gnl|panTro1|chr2 (100321326-100321478) | |
| 228-358, gnl|rheMac2|chr2 (18325317-18325469) | |
| 228-358, gnl|rn3|chr11 (41695552-41695702) | |
| 228-358, gnl|xenTro1|scaffold_72 (14138-14277) | |
| 561-724, gnl|bosTau2|chr1 (22100353-22100190) | |
| 561-724, gnl|Hg17|chr3 (99151554-99151388) | |
| 561-724, gnl|Mm7|chr16 (59423294-59423460) | |
| 912-1378, gnl|bosTau2|chr1 (22096322-22095853) | |
| 912-1378, gnl|Hg17|chr3 (99146878-99146429) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| spl (0.429553) | |
| ste (0.405625) | |
| ova (0.387397) | |
| vin (0.332557) | |
| cty (0.20816) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.429553) | |
| ste (0.405625) | |
| ova (0.387397) | |
| vin (0.332557) | |
| cty (0.20816) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eje (0.0988338) | |
| ldo (0.0970026) |