Non-Coding RNA Search

Ss1.1-Pig4-TMW8036F18.3

Sequence:


               
               GGGAGTTACAGGAAGGCACTTACGTGATGGTGGCAGGCCCCAGCTTTGAGACTGTGGCAG
AGTGTCGTCTGTTGCAGAAGCTGGGAGCAGATGCTGTTGGCATGAGCACAGTACCAGAAG
TTATAGTCGCAAGGCACTGTGGACTTCGAGTCTTTGGCTTCTCTCTCATCACTAACAAGG
TCATCTTGGATTATGAATGCCAGAAGAAGGCCAATCATGAGGAAGTGCTAGAGGCTGGGA
AACAAGCTGCACAGAAATTGGAACAGTTTGTCTCCATCCTTATAGCTGGCATTCCACCGC
CTAAGGCCAGTTAACCAGCCCTAGAGTGGTCTGGCCTCTCCCTTAGGGGACCCAAGGAGG
TGCTACCTACTTTGGCCTCTTACTGTGGTCACAGGCCTCTGCCCTTAGGTAGTGGCAAAA
AGGAGAGGAAGATTCCTATTCATCACTTTTCCTACTTCTCACACCAGACTTTTCTGATGC
TGGGTCCTCTTTTTCTCAATTGTCACCTCAAAAATGATATCTACCCCTATTCCTCTTCAA
GAACTGAAGCTCAAGCCTGACCACACATCCCCAGATATGCCCAGGATTTGACTTGGGGTC
ATCGGACTACTGCCAGCTTTTTGAGATGGTCCTCTCACATTCCTGAGGACTCCATTGTTC
CCCCTCAAAGTACCGGAGACCACACAAGGAACAGCCCATAGCTCCTTTTAGAATTTTATA
CTATCATATTTTGAGAATAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTTACAGGAAGGCACTTACGTGATGGTGGCAGGCCCCAGCTTTGAGACTGTGGCAG
AGTGTCGTCTGTTGCAGAAGCTGGGAGCAGATGCTGTTGGCATGAGCACAGTACCAGAAG
TTATAGTCGCAAGGCACTGTGGACTTCGAGTCTTTGGCTTCTCTCTCATCACTAACAAGG
TCATCTTGGATTATGAATGCCAGAAGAAGGCCAATCATGAGGAAGTGCTAGAGGCTGGGA
AACAAGCTGCACAGAAATTGGAACAGTTTGTCTCCATCCTTATAGCTGGCATTCCACCGC
CTAAGGCCAGTTAACCAGCCCTAGAGTGGTCTGGCCTCTCCCTTAGGGGACCCAAGGAGG
TGCTACCTACTTTGGCCTCTTACTGTGGTCACAGGCCTCTGCCCTTAGGTAGTGGCAAAA
AGGAGAGGAAGATTCCTATTCATCACTTTTCCTACTTCTCACACCAGACTTTTCTGATGC
TGGGTCCTCTTTTTCTCAATTGTCACCTCAAAAATGATATCTACCCCTATTCCTCTTCAA
GAACTGAAGCTCAAGCCTGACCACACATCCCCAGATATGCCCAGGATTTGACTTGGGGTC
ATCGGACTACTGCCAGCTTTTTGAGATGGTCCTCTCACATTCCTGAGGACTCCATTGTTC
CCCCTCAAAGTACCGGAGACCACACAAGGAACAGCCCATAGCTCCTTTTAGAATTTTATA
CTATCATATTTTGAGAATAAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7959839|gb|AAF71090.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7959839|gb|AAF71090.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-454, + strand, RNAz p=0.959008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-454, + strand, RNAz p=0.959008

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126154, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126154, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               99-579, gnl|bosTau2|chr10 (16348587-16348121)
               

               
               99-579, gnl|Hg17|chr14 (20014382-20014912)
               

               
               99-579, gnl|Mm7|chr14 (46285300-46285751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-579, gnl|bosTau2|chr10 (16348587-16348121)
               

               
               99-579, gnl|Hg17|chr14 (20014382-20014912)
               

               
               99-579, gnl|Mm7|chr14 (46285300-46285751)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.390016)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)

	99-579, gnl\|bosTau2\|chr10 (16348587-16348121)
	99-579, gnl\|Hg17\|chr14 (20014382-20014912)
	99-579, gnl\|Mm7\|chr14 (46285300-46285751)